Literature DB >> 28380910

Stochastic fluorescence switching of nucleic acids under visible light illumination.

Biqin Dong, Luay M Almassalha, Brian T Soetikno, John E Chandler, The-Quyen Nguyen, Ben E Urban, Cheng Sun, Hao F Zhang, Vadim Backman.   

Abstract

We report detailed characterizations of stochastic fluorescence switching of unmodified nucleic acids under visible light illumination. Although the fluorescent emission from nucleic acids under the visible light illumination has long been overlooked due to their apparent low absorption cross section, our quantitative characterizations reveal the high quantum yield and high photon count in individual fluorescence emission events of nucleic acids at physiological concentrations. Owing to these characteristics, the stochastic fluorescence switching of nucleic acids could be comparable to that of some of the most potent exogenous fluorescence probes for localization-based super-resolution imaging. Therefore, utilizing the principle of single-molecule photon-localization microscopy, native nucleic acids could be ideal candidates for optical label-free super-resolution imaging.

Year:  2017        PMID: 28380910      PMCID: PMC5810907          DOI: 10.1364/OE.25.007929

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  26 in total

1.  Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride.

Authors:  Nalini Raghavachari; Yijia P Bao; Guangshan Li; Xinying Xie; Uwe R Müller
Journal:  Anal Biochem       Date:  2003-01-15       Impact factor: 3.365

2.  Cell biology: join the crowd.

Authors:  R John Ellis; Allen P Minton
Journal:  Nature       Date:  2003-09-04       Impact factor: 49.962

3.  Effects of analogs of the DNA minor groove binder Hoechst 33258 on topoisomerase II and I mediated activities.

Authors:  T A Beerman; M M McHugh; R Sigmund; J W Lown; K E Rao; Y Bathini
Journal:  Biochim Biophys Acta       Date:  1992-05-07

4.  Bayesian cluster identification in single-molecule localization microscopy data.

Authors:  Patrick Rubin-Delanchy; Garth L Burn; Juliette Griffié; David J Williamson; Nicholas A Heard; Andrew P Cope; Dylan M Owen
Journal:  Nat Methods       Date:  2015-10-05       Impact factor: 28.547

5.  Fluorescence nanoscopy by ground-state depletion and single-molecule return.

Authors:  Jonas Fölling; Mariano Bossi; Hannes Bock; Rebecca Medda; Christian A Wurm; Birka Hein; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2008-09-15       Impact factor: 28.547

6.  Concentration evaluation of chromatin in unstained resin-embedded sections by means of low-dose ratio-contrast imaging in STEM.

Authors:  B Bohrmann; M Haider; E Kellenberger
Journal:  Ultramicroscopy       Date:  1993-02       Impact factor: 2.689

7.  Atmospheric photochemistry at a fatty acid-coated air-water interface.

Authors:  Stéphanie Rossignol; Liselotte Tinel; Angelica Bianco; Monica Passananti; Marcello Brigante; D James Donaldson; Christian George
Journal:  Science       Date:  2016-08-12       Impact factor: 47.728

8.  Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- histones.

Authors:  Atsushi Matsuda; Lin Shao; Jerome Boulanger; Charles Kervrann; Peter M Carlton; Peter Kner; David Agard; John W Sedat
Journal:  PLoS One       Date:  2010-09-15       Impact factor: 3.240

Review 9.  A fractal model for nuclear organization: current evidence and biological implications.

Authors:  Aurélien Bancaud; Christophe Lavelle; Sébastien Huet; Jan Ellenberg
Journal:  Nucleic Acids Res       Date:  2012-07-11       Impact factor: 16.971

10.  Varying label density allows artifact-free analysis of membrane-protein nanoclusters.

Authors:  Florian Baumgart; Andreas M Arnold; Konrad Leskovar; Kaj Staszek; Martin Fölser; Julian Weghuber; Hannes Stockinger; Gerhard J Schütz
Journal:  Nat Methods       Date:  2016-06-13       Impact factor: 28.547

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  2 in total

1.  Sub-10-nm imaging of nucleic acids using spectroscopic intrinsic-contrast photon-localization optical nanoscopy (SICLON).

Authors:  Adam Eshein; Yue Li; Biqin Dong; Luay M Almassalha; John E Chandler; The-Quyen Nguyen; Karl A Hujsak; Vinayak P Dravid; Cheng Sun; Hao F Zhang; Vadim Backman
Journal:  Opt Lett       Date:  2018-12-01       Impact factor: 3.776

2.  Method to identify and minimize artifacts induced by fluorescent impurities in single-molecule localization microscopy.

Authors:  Janel L Davis; Biqin Dong; Cheng Sun; Hao F Zhang
Journal:  J Biomed Opt       Date:  2018-10       Impact factor: 3.170

  2 in total

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