Literature DB >> 28379940

The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest.

Michael R Hall1, Kevin M Kocot2, Kenneth W Baughman3, Selene L Fernandez-Valverde2, Marie E A Gauthier2, William L Hatleberg2, Arunkumar Krishnan2, Carmel McDougall2, Cherie A Motti1, Eiichi Shoguchi3, Tianfang Wang4, Xueyan Xiang2, Min Zhao2,4, Utpal Bose1,4, Chuya Shinzato3, Kanako Hisata3, Manabu Fujie5, Miyuki Kanda5, Scott F Cummins4, Noriyuki Satoh3, Sandie M Degnan2, Bernard M Degnan2.   

Abstract

The crown-of-thorns starfish (COTS, the Acanthaster planci species group) is a highly fecund predator of reef-building corals throughout the Indo-Pacific region. COTS population outbreaks cause substantial loss of coral cover, diminishing the integrity and resilience of reef ecosystems. Here we sequenced genomes of COTS from the Great Barrier Reef, Australia and Okinawa, Japan to identify gene products that underlie species-specific communication and could potentially be used in biocontrol strategies. We focused on water-borne chemical plumes released from aggregating COTS, which make the normally sedentary starfish become highly active. Peptide sequences detected in these plumes by mass spectrometry are encoded in the COTS genome and expressed in external tissues. The exoproteome released by aggregating COTS consists largely of signalling factors and hydrolytic enzymes, and includes an expanded and rapidly evolving set of starfish-specific ependymin-related proteins. These secreted proteins may be detected by members of a large family of olfactory-receptor-like G-protein-coupled receptors that are expressed externally, sometimes in a sex-specific manner. This study provides insights into COTS-specific communication that may guide the generation of peptide mimetics for use on reefs with COTS outbreaks.

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Year:  2017        PMID: 28379940     DOI: 10.1038/nature22033

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  67 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

3.  Identification of chemosensory receptor genes from vertebrate genomes.

Authors:  Yoshihito Niimura
Journal:  Methods Mol Biol       Date:  2013

4.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

Review 7.  Do echinoderm genomes measure up?

Authors:  R Andrew Cameron; Parul Kudtarkar; Susan M Gordon; Kim C Worley; Richard A Gibbs
Journal:  Mar Genomics       Date:  2015-02-17       Impact factor: 1.710

8.  Remarkable similarities between the hemichordate (Saccoglossus kowalevskii) and vertebrate GPCR repertoire.

Authors:  Arunkumar Krishnan; Markus Sällman Almén; Robert Fredriksson; Helgi B Schiöth
Journal:  Gene       Date:  2013-05-15       Impact factor: 3.688

Review 9.  The structure and function of G-protein-coupled receptors.

Authors:  Daniel M Rosenbaum; Søren G F Rasmussen; Brian K Kobilka
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

10.  HaMStR: profile hidden markov model based search for orthologs in ESTs.

Authors:  Ingo Ebersberger; Sascha Strauss; Arndt von Haeseler
Journal:  BMC Evol Biol       Date:  2009-07-08       Impact factor: 3.260

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  55 in total

1.  Biocontrol: Crown-of-thorns no more.

Authors:  Mónica Medina
Journal:  Nature       Date:  2017-04-05       Impact factor: 49.962

2.  Metazoan evolution of glutamate receptors reveals unreported phylogenetic groups and divergent lineage-specific events.

Authors:  David Ramos-Vicente; Jie Ji; Esther Gratacòs-Batlle; Gemma Gou; Rita Reig-Viader; Javier Luís; Demian Burguera; Enrique Navas-Perez; Jordi García-Fernández; Pablo Fuentes-Prior; Hector Escriva; Nerea Roher; David Soto; Àlex Bayés
Journal:  Elife       Date:  2018-11-22       Impact factor: 8.140

Review 3.  Chemical Ecology of Chemosensation in Asteroidea: Insights Towards Management Strategies of Pest Species.

Authors:  Cherie A Motti; Utpal Bose; Rebecca E Roberts; Carmel McDougall; Meaghan K Smith; Michael R Hall; Scott F Cummins
Journal:  J Chem Ecol       Date:  2018-01-24       Impact factor: 2.626

4.  Ephemeral and Localized Outbreaks of the Coral Predator Acanthaster cf. solaris in the Southwestern Lagoon of New Caledonia.

Authors:  Mehdi Adjeroud; Mohsen Kayal; Christophe Peignon; Matthieu Juncker; Suzanne C Mills; Ricardo Beldade; Pascal Dumas
Journal:  Zool Stud       Date:  2018-02-05       Impact factor: 2.058

5.  Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis.

Authors:  Hideaki Yuasa; Rei Kajitani; Yuta Nakamura; Kazuki Takahashi; Miki Okuno; Fumiya Kobayashi; Takahiro Shinoda; Atsushi Toyoda; Yutaka Suzuki; Nalinee Thongtham; Zac Forsman; Omri Bronstein; Davide Seveso; Enrico Montalbetti; Coralie Taquet; Gal Eyal; Nina Yasuda; Takehiko Itoh
Journal:  DNA Res       Date:  2021-08-25       Impact factor: 4.477

6.  Interspecies comparison of sea star adhesive proteins.

Authors:  Birgit Lengerer; Morgane Algrain; Mathilde Lefevre; Jérôme Delroisse; Elise Hennebert; Patrick Flammang
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-09-09       Impact factor: 6.237

7.  Existence and functions of a kisspeptin neuropeptide signaling system in a non-chordate deuterostome species.

Authors:  Tianming Wang; Zheng Cao; Zhangfei Shen; Jingwen Yang; Xu Chen; Zhen Yang; Ke Xu; Xiaowei Xiang; Qiuhan Yu; Yimin Song; Weiwei Wang; Yanan Tian; Lina Sun; Libin Zhang; Su Guo; Naiming Zhou
Journal:  Elife       Date:  2020-06-09       Impact factor: 8.140

8.  Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase.

Authors:  Sven Schenk; Stephanie C Bannister; Fritz J Sedlazeck; Dorothea Anrather; Bui Quang Minh; Andrea Bileck; Markus Hartl; Arndt von Haeseler; Christopher Gerner; Florian Raible; Kristin Tessmar-Raible
Journal:  Elife       Date:  2019-02-15       Impact factor: 8.140

9.  Development and Interrogation of a Transcriptomic Resource for the Giant Triton Snail (Charonia tritonis).

Authors:  A H Klein; C A Motti; A K Hillberg; T Ventura; P Thomas-Hall; T Armstrong; T Barker; P Whatmore; S F Cummins
Journal:  Mar Biotechnol (NY)       Date:  2021-06-30       Impact factor: 3.619

10.  Ambulacrarian insulin-related peptides and their putative receptors suggest how insulin and similar peptides may have evolved from insulin-like growth factor.

Authors:  Jan A Veenstra
Journal:  PeerJ       Date:  2021-07-14       Impact factor: 2.984

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