| Literature DB >> 28377727 |
Erasmia Rouka1, Georgios D Vavougios2, Evgeniy I Solenov3, Konstantinos I Gourgoulianis4, Chrissi Hatzoglou5, Sotirios G Zarogiannis5.
Abstract
Malignant pleural mesothelioma (MPM) is a highly aggressive tumor primarily associated with asbestos exposure. Early detection of MPM is restricted by the long latency period until clinical presentation, the ineffectiveness of imaging techniques in early stage detection and the lack of non-invasive biomarkers with high sensitivity and specificity. In this study we used transcriptome data mining in order to determine which CLAUDIN (CLDN) genes are differentially expressed in MPM as compared to controls. Using the same approach we identified the interactome of the differentially expressed CLDN genes and assessed their expression profile. Subsequently, we evaluated the effect of tumor histology, asbestos exposure, CDKN2A deletion status, and gender on the gene expression level of the claudin interactome. We found that 5 out of 15 studied CLDNs (4, 5, 8, 10, 15) and 4 out of 27 available interactors (S100B, SHBG, CDH5, CXCL8) were differentially expressed in MPM specimens vs. healthy tissues. The genes encoding the CLDN-15 and S100B proteins present differences in their expression profile between the three histological subtypes of MPM. Moreover, CLDN-15 is significantly under-expressed in the cohort of patients with previous history of asbestos exposure. CLDN-15 was also found significantly underexpressed in patients lacking the CDKN2A gene. These results warrant the detailed in vitro investigation of the role of CDLN-15 in the pathobiology of MPM.Entities:
Keywords: CDKN2A; asbestos; claudins; interactome; malignant mesothelioma; pleura; tight junctions; transcriptome
Year: 2017 PMID: 28377727 PMCID: PMC5359316 DOI: 10.3389/fphys.2017.00156
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Interactome of the gene networks of claudin 4, 5, 8, 10, and 15.
| VKORC1 | Vitamin K epoxide reductase complex, subunit 1 |
| S100B | S100 calcium binding protein B |
| EPHA2 | EPH receptor A2 |
| GEM | GTP binding protein overexpressed in skeletal muscle |
| SHBG | Sex hormone-binding globulin |
| UBC | Ubiquitin C |
| OCLN | Occludin |
| TJP1 | Tight junction protein 1 |
| TJP2 | Tight junction protein 2 |
| TJP3 | Tight junction protein 3 |
| INADL | InaD-like (Drosophila) |
| CDH5 | Cadherin 5, type 2 (vascular endothelium) |
| MPDZ | Multiple PDZ domain protein |
| WNK4 | WNK lysine deficient protein kinase 4 |
| CLDN1 | Claudin 1 |
| CLDN2 | Claudin 2 |
| CLDN3 | Claudin 3 |
| CLDN6 | Claudin 6 |
| CLDN9 | Claudin 9 |
| CLDN11 | Claudin 11 |
| CLDN12 | Claudin 12 |
| CLDN14 | Claudin 14 |
| CLDN16 | Claudin 16 |
| CLDN17 | Claudin 17 |
| CLDN18 | Claudin 18 |
| CLDN19 | Claudin 19 |
| CLDN20 | Claudin 20 |
| CLDN22 | Claudin 22 |
| CLDN23 | Claudin 23 |
| CLDN24 | Claudin 24 |
| CLDN25 | Claudin25 |
| ESAM | Endothelial cell adhesion molecule |
| TACSTD2 | Tumor-associated calcium signal transducer 2 |
| CCDC155 | Coiled-coil domain containing 155 |
| SYNE4 | Spectrin repeat containing, nuclear envelope family member 4 |
| ATE1 | Arginyltransferase 1 |
| MARVELD3 | Marvel domain containing 3 |
| CXCL8 | Chemokine (C-X-C Motif) ligand 8 |
| ETV5 | Ets variant 5 |
| GRM5 | Glutamate receptor, metabotropic 5 |
| FGF1 | Fibroplast growth factor 1 |
Claudins differentially expressed in MPM patients.
| CLDN15 | 0.002 | 6.351 |
| CLDN4 | 0.036 | −2.291 |
| CLDN5 | 0.001 | −4.055 |
| CLDN8 | 0.003 | −3.090 |
| CLDN10 | 0.001 | −1.484 |
Claudin interactome genes differentially expressed in MPM patients.
| S100B | 0.001 | −4.675 |
| SHBG | 0.004 | −1.848 |
| CDH5 | 0.015 | −2.926 |
| CXCL8 | 0.007 | −3.605 |
Figure 1CLDN-15 is over-expressed in epithelioid MPM as compared to biphasic and sarcomatoid MPM. The number of patients per group is demonstrated in the figure. Gene expression of CLDN15 gene data was log transformed and normalized as described previously (Rhodes et al., 2004). **p < 0.01; ***p < 0.001.
Figure 2S100B is over-expressed in sarcomatoid MPM as compared to epithelioid MPM while it does not differ from biphasic MPM. The number of patients per group is demonstrated in the figure. Gene expression of S100B gene data was log transformed and normalized as described previously (Rhodes et al., 2004). *p < 0.05.
Figure 3CLDN-15 is under-expressed in MPM patients with history of asbestos exposure. The number of patients per group is demonstrated in the figure. Gene expression of CLDN-15 gene data were log transformed and normalized as described previously (Rhodes et al., 2004). **p < 0.01.
Figure 4CLDN-15 is under-expressed in MPM patients with deletion of the CDKN2A gene. The number of patients per group is demonstrated in the figure. Gene expression of CLDN-15 gene data were log transformed and normalized as described previously (Rhodes et al., 2004). *p < 0.05.