| Literature DB >> 28373908 |
Wei-Wei Chen1, Wen Xu1, Yang-Xin Xie1, Yun-Hui Zhang2, Dan Wu1, Fu-Sheng Wang1, Min Zhao1.
Abstract
BACKGROUND: Recruit training sites are places with a high incidence of respiratory infectious diseases. Effective surveillance for acute respiratory infectious diseases in a recruit training site is an important way to prevent disease outbreaks.Entities:
Keywords: Recruit; Respiratory infectious diseases; Surveillance
Mesh:
Year: 2017 PMID: 28373908 PMCID: PMC5376280 DOI: 10.1186/s40779-017-0120-y
Source DB: PubMed Journal: Mil Med Res ISSN: 2054-9369
Primers and probes used for pathogen detection in acute respiratory infections
| Pathogen | Name of primer | Sequence (5′-3′) |
|---|---|---|
| Influenza A virus | QFluA-F | GAC CRA TCC TGT CAC CTC TGA C |
| QFluA-R | GGG CAT TYT GGA CAA AKC GTC TAC G | |
| QFLuA-Probe | FAM- TGC AGT CCT CGC TCA CTG GGC ACG –BHQ1 | |
| Influenza B virus | QFluB-F | TCC TCA ACT CAC TCT TCG AGC G |
| QFluB-R | CGG TGC TCT TGA CCA AAT TGG | |
| QFLuB-Probe | FAM- CCA ATT CGA GCA GCT GAA ACT GCG GTG -BHQ1 | |
| Influenza A | QH1F | AAC ATG TTA CCC AGG GCA TTT CGC |
| QH1R | GTG GTT GGG CCA TGA GCT TTC TTT | |
| QH1-Probe | FAM-GAG GAA CTG AGG GAG CAA TTG AGT TCA G-BHQ1 | |
| Influenza A | QH3F | ACC CTC AGT GTG ATG GCT TCC AAA |
| QH3R | TAA GGG AGG CAT AAT CCG GCA CAT | |
| QH3-Probe | FAM-ACG CAG CAA AGC CTA CAG CAA CTG T-BHQ1 | |
| Human adenovirus group B | qHAdV-UniF | TTTGAGGTYGAYCCCATGGA |
| qHAdV-UniR | AGAASGGTGTRCGCAGGTA | |
| qHAdV-UniProbe | FAM-ACCACGTCGAARACTTCGAA-BHQ1 | |
| Human adenovirus type 3 | qHAdV3-F | GGGAGACAATATTACTAAAGAAGGTTTGC |
| qHAdV3-R | CAACTTGAGGCTCTGGCTGATA | |
| qHAdV3-Probe | FAM-CACTAC“T*”GAAGGAGAAGAAAAGCCCATTTATGCC | |
| Human adenovirus type 4 | qHAdV4-F | AAGCCAACCTGTGGAGKAACT |
| qHAdV4-R | TGTTGGCCGGTGTGTATTTG | |
| qHAdV4-Probe | FAM-CTSTATGCCAATGTTGCCCTCTATTTGCCT-BHQ1 | |
| Human adenovirus type 7 | qHAdV7-F | GAGGAGCCAGATATTGATATGGAATT |
| qHAdV7-R | AATTGACATTTTCCGTGTAAAGCA | |
| qHAdV7-Probe | FAM-AAGCTGCTGACGCTTTTTCGCCTGA-BHQ1 | |
| Human adenovirus type 11/55 | qHAdV55-F | CGGAGCAGCCAAATCAGAA |
| qHAdV55-R | CATGAGTGTCTGGAGTTTCCAAAT | |
| qHAdV55-Probe | FAM-TGCGGCATCACAGAAAACAAACTTAAGTC-BHQ1 | |
| Human adenovirus type 14 | qHAdV14-F | GAAAATCATGGTGTGGAAGATGAA |
| qHAdV14-R | CAAGCTTGGTCTCCATTTAACTGA | |
| qHAdV14-Probe | FAM-ACGGCATCGGTCCGCGAACA-BHQ1 | |
| Internal reference | QRnaseP-F | AGA TTT GGA CCT GCG AGC G |
| QRnaseP-R | GAGCGGCTGTCTCCACAAGT | |
| QRnaseP-P | FAM-TTCTGACCTGAAGGCTCTGCGCG-BHQ1 |
Primers for the amplification of a finger-print sequence of human adenovirus
| Name of primer | Sequence (5′-3′) | Product length (site in the hexon gene of HAdV) |
|---|---|---|
| HAdVT1-F | CCATAYTCBGGYACDGCYTAC | 595 bp (474–1068) |
| HAdVT2-F | GCDGTAGACAGYTATGATCC | 498 bp (1257–1754) |
Background information for the recruits
| Item | Basic information |
|---|---|
| Male/Female ( | 722/78 |
| Age(year) | 18.9 ± 1.69 |
| Life style [ | |
| Smoke | 360(45) |
| Drunk | 352(44) |
| Medical history [ | |
| Tonsillectomy | 14(1.8) |
| Recurrent respiratory infection | 37(4.6) |
| History of measles | 20(2.5) |
| Chicken pox | 241(30.1) |
| Influenza vaccinationa | 9(1.1) |
| National planned vaccination rate | 758(94.8) |
ameans received influenza vaccination in the last 2 years
Adenovirus IgG in serum samples and adenovirus in nasopharyngeal swabs from recruits with febrile respiratory infection symptoms [n (%)]
| IgG | All recruits | Recruits with ARDs and AdV infectiona | Recruits with ARDs without AdV infectionb |
|---|---|---|---|
| IgG+ | 352 (48.2) | 4 (80) | 13 (38.2) |
| IgG− | 378 (51.8) | 1 (20) | 21 (61.8) |
| Total | 730 (100) | 5 (100) | 34 (100) |
ameans the recruits who acquired ARDs caused by AdV infection confirmed by a PCR test
bmeans recruits who acquired ARDs without AdV infection confirmed by a PCR test