Sandrine Perrin1, Cyril Firmo1, Sophie Lemoine1, Stéphane Le Crom1,2, Laurent Jourdren1. 1. École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France. 2. Sorbonne Universités, UPMC Univ Paris 06, Univ Antilles, Univ Nice Sophia Antipolis, CNRS, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), Paris, France.
Abstract
MOTIVATION: Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports. AVAILABILITY AND IMPLEMENTATION: Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http://www.outils.genomique.biologie.ens.fr/aozan/ . Aozan source code is available on GitHub: https://github.com/GenomicParisCentre/aozan . CONTACT: aozan@biologie.ens.fr.
MOTIVATION: Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports. AVAILABILITY AND IMPLEMENTATION: Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http://www.outils.genomique.biologie.ens.fr/aozan/ . Aozan source code is available on GitHub: https://github.com/GenomicParisCentre/aozan . CONTACT: aozan@biologie.ens.fr.
Authors: Juliette Paillet; Céleste Plantureux; Sarah Lévesque; Julie Le Naour; Gautier Stoll; Allan Sauvat; Pamela Caudana; Jimena Tosello Boari; Norma Bloy; Sylvie Lachkar; Isabelle Martins; Paule Opolon; Andrea Checcoli; Agathe Delaune; Noémie Robil; Pierre de la Grange; Juliette Hamroune; Franck Letourneur; Gwennhael Autret; Patrick S C Leung; M Eric Gershwin; Jie S Zhu; Mark J Kurth; Bouchra Lekbaby; Jérémy Augustin; Youra Kim; Shashi Gujar; Cédric Coulouarn; Laura Fouassier; Laurence Zitvogel; Eliane Piaggio; Chantal Housset; Patrick Soussan; Maria Chiara Maiuri; Guido Kroemer; Jonathan G Pol Journal: J Exp Med Date: 2021-09-08 Impact factor: 14.307