Literature DB >> 28364192

Protein arginine methylation: a prominent modification and its demethylation.

Juste Wesche1, Sarah Kühn1, Benedikt M Kessler2, Maayan Salton3, Alexander Wolf4.   

Abstract

Arginine methylation of histones is one mechanism of epigenetic regulation in eukaryotic cells. Methylarginines can also be found in non-histone proteins involved in various different processes in a cell. An enzyme family of nine protein arginine methyltransferases catalyses the addition of methyl groups on arginines of histone and non-histone proteins, resulting in either mono- or dimethylated-arginine residues. The reversibility of histone modifications is an essential feature of epigenetic regulation to respond to changes in environmental factors, signalling events, or metabolic alterations. Prominent histone modifications like lysine acetylation and lysine methylation are reversible. Enzyme family pairs have been identified, with each pair of lysine acetyltransferases/deacetylases and lysine methyltransferases/demethylases operating complementarily to generate or erase lysine modifications. Several analyses also indicate a reversible nature of arginine methylation, but the enzymes facilitating direct removal of methyl moieties from arginine residues in proteins have been discussed controversially. Differing reports have been seen for initially characterized putative candidates, like peptidyl arginine deiminase 4 or Jumonji-domain containing protein 6. Here, we review the most recent cellular, biochemical, and mass spectrometry work on arginine methylation and its reversible nature with a special focus on putative arginine demethylases, including the enzyme superfamily of Fe(II) and 2-oxoglutarate-dependent oxygenases.

Entities:  

Keywords:  Histone modifications; KDM; KDM2A; KDM3A; KDM4E; KDM5C; KDM6B; KDM7B; KMT; Liquid chromatography–tandem mass spectrometry; PHF8; Post-translational modifications

Mesh:

Substances:

Year:  2017        PMID: 28364192     DOI: 10.1007/s00018-017-2515-z

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  76 in total

Review 1.  Biochemistry and regulation of the protein arginine methyltransferases (PRMTs).

Authors:  Yalemi Morales; Tamar Cáceres; Kyle May; Joan M Hevel
Journal:  Arch Biochem Biophys       Date:  2015-12-02       Impact factor: 4.013

2.  Arginine Demethylation of G3BP1 Promotes Stress Granule Assembly.

Authors:  Wei-Chih Tsai; Sitaram Gayatri; Lucas C Reineke; Gianluca Sbardella; Mark T Bedford; Richard E Lloyd
Journal:  J Biol Chem       Date:  2016-09-06       Impact factor: 5.157

3.  First detection and quantification of N(δ)-monomethylarginine, a structural isomer of N(G)-monomethylarginine, in humans using MS(3).

Authors:  Jens Martens-Lobenhoffer; Stefanie M Bode-Böger; Bernd Clement
Journal:  Anal Biochem       Date:  2015-10-20       Impact factor: 3.365

4.  Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance.

Authors:  Valentina Migliori; Julius Müller; Sameer Phalke; Diana Low; Marco Bezzi; Wei Chuen Mok; Sanjeeb Kumar Sahu; Jayantha Gunaratne; Paola Capasso; Christian Bassi; Valentina Cecatiello; Ario De Marco; Walter Blackstock; Vladimir Kuznetsov; Bruno Amati; Marina Mapelli; Ernesto Guccione
Journal:  Nat Struct Mol Biol       Date:  2012-01-08       Impact factor: 15.369

5.  Arginine methylation of HSP70 regulates retinoid acid-mediated RARβ2 gene activation.

Authors:  Wei-wei Gao; Rong-quan Xiao; Bing-ling Peng; Huan-teng Xu; Hai-feng Shen; Ming-feng Huang; Tao-tao Shi; Jia Yi; Wen-juan Zhang; Xiao-nan Wu; Xiang Gao; Xiang-zhi Lin; Pieter C Dorrestein; Michael G Rosenfeld; Wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-16       Impact factor: 11.205

6.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

7.  delta-N-methylarginine is a novel posttranslational modification of arginine residues in yeast proteins.

Authors:  P Zobel-Thropp; J D Gary; S Clarke
Journal:  J Biol Chem       Date:  1998-11-06       Impact factor: 5.157

8.  High expression of JMJD6 predicts unfavorable survival in lung adenocarcinoma.

Authors:  Ji Zhang; Shuang-Shuang Ni; Wei-Li Zhao; Xiao-Chun Dong; Jin-Lin Wang
Journal:  Tumour Biol       Date:  2013-04-18

9.  Expanding the yeast protein arginine methylome.

Authors:  Michael Plank; Roman Fischer; Vincent Geoghegan; Philip D Charles; Rebecca Konietzny; Oreste Acuto; Catherine Pears; Christopher J Schofield; Benedikt M Kessler
Journal:  Proteomics       Date:  2015-07-02       Impact factor: 3.984

Review 10.  Protein arginine methylation/demethylation and cancer.

Authors:  Coralie Poulard; Laura Corbo; Muriel Le Romancer
Journal:  Oncotarget       Date:  2016-10-11
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  26 in total

1.  Posttranslational modifications in proteins: resources, tools and prediction methods.

Authors:  Shahin Ramazi; Javad Zahiri
Journal:  Database (Oxford)       Date:  2021-04-07       Impact factor: 3.451

2.  [Transcription of protein arginine N-methyltransferase genes in mouse dorsal root ganglia following peripheral nerve injury].

Authors:  Hua-Li Xu; Shi-Yuan Xu; Kai Mo
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2017-12-20

3.  Protein arginine methyltransferase 1 mediates renal fibroblast activation and fibrogenesis through activation of Smad3 signaling.

Authors:  Yu Zhu; Chao Yu; Shougang Zhuang
Journal:  Am J Physiol Renal Physiol       Date:  2019-12-09

Review 4.  Histone modification in podocyte injury of diabetic nephropathy.

Authors:  Simeng Wang; Xinyu Zhang; Qinglian Wang; Rong Wang
Journal:  J Mol Med (Berl)       Date:  2022-08-30       Impact factor: 5.606

5.  Interaction of huntingtin with PRMTs and its subsequent arginine methylation affects HTT solubility, phase transition behavior and neuronal toxicity.

Authors:  Tamara Ratovitski; Mali Jiang; Robert N O'Meally; Priyanka Rauniyar; Ekaterine Chighladze; Anikó Faragó; Siddhi V Kamath; Jing Jin; Alexey V Shevelkin; Robert N Cole; Christopher A Ross
Journal:  Hum Mol Genet       Date:  2022-05-19       Impact factor: 5.121

Review 6.  Nε-lysine acetylation in the endoplasmic reticulum - a novel cellular mechanism that regulates proteostasis and autophagy.

Authors:  Mark A Farrugia; Luigi Puglielli
Journal:  J Cell Sci       Date:  2018-11-16       Impact factor: 5.285

7.  SETD4 in the Proliferation, Migration, Angiogenesis, Myogenic Differentiation and Genomic Methylation of Bone Marrow Mesenchymal Stem Cells.

Authors:  Xiaomin Liao; Caixia Wu; Zhongming Shao; Shuya Zhang; Yuan Zou; Keke Wang; Yanping Ha; Jingci Xing; Axiu Zheng; Zhihua Shen; Shaojiang Zheng; Junli Guo; Wei Jie
Journal:  Stem Cell Rev Rep       Date:  2021-01-27       Impact factor: 5.739

8.  Huntingtin-mediated axonal transport requires arginine methylation by PRMT6.

Authors:  Alice Migazzi; Chiara Scaramuzzino; Eric N Anderson; Debasmita Tripathy; Ivó H Hernández; Rogan A Grant; Michela Roccuzzo; Laura Tosatto; Amandine Virlogeux; Chiara Zuccato; Andrea Caricasole; Tamara Ratovitski; Christopher A Ross; Udai B Pandey; José J Lucas; Frédéric Saudou; Maria Pennuto; Manuela Basso
Journal:  Cell Rep       Date:  2021-04-13       Impact factor: 9.423

9.  The epigenetic and morphogenetic effects of molecular oxygen and its derived reactive species in development.

Authors:  Michael J Hitchler; Frederick E Domann
Journal:  Free Radic Biol Med       Date:  2021-01-12       Impact factor: 8.101

Review 10.  The Role of Protein Arginine Methylation as Post-Translational Modification on Actin Cytoskeletal Components in Neuronal Structure and Function.

Authors:  Britta Qualmann; Michael M Kessels
Journal:  Cells       Date:  2021-05-01       Impact factor: 6.600

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