Literature DB >> 28362437

Automatic tracing of ultra-volumes of neuronal images.

Hanchuan Peng1, Zhi Zhou1, Erik Meijering2, Ting Zhao3, Giorgio A Ascoli4, Michael Hawrylycz1.   

Abstract

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Year:  2017        PMID： 28362437      PMCID： PMC7199653          DOI： 10.1038/nmeth.4233

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

Review 1.  Cellular-resolution connectomics: challenges of dense neural circuit reconstruction.

Authors:  Moritz Helmstaedter
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

2.  3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution.

Authors:  Jingpeng Wu; Yong He; Zhongqin Yang; Congdi Guo; Qingming Luo; Wei Zhou; Shangbin Chen; Anan Li; Benyi Xiong; Tao Jiang; Hui Gong
Journal:  Neuroimage       Date:  2013-10-31       Impact factor: 6.556

3.  APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Authors:  Hang Xiao; Hanchuan Peng
Journal:  Bioinformatics       Date:  2013-04-19       Impact factor: 6.937

Review 4.  Automated Neuron Tracing Methods: An Updated Account.

Authors:  Ludovica Acciai; Paolo Soda; Giulio Iannello
Journal:  Neuroinformatics       Date:  2016-10

5.  BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Authors:  Hanchuan Peng; Michael Hawrylycz; Jane Roskams; Sean Hill; Nelson Spruston; Erik Meijering; Giorgio A Ascoli
Journal:  Neuron       Date:  2015-07-15       Impact factor: 17.173

6.  Automated reconstruction of neuronal morphology based on local geometrical and global structural models.

Authors:  Ting Zhao; Jun Xie; Fernando Amat; Nathan Clack; Parvez Ahammad; Hanchuan Peng; Fuhui Long; Eugene Myers
Journal:  Neuroinformatics       Date:  2011-09
  6 in total
  19 in total

1.  Brain-Wide Shape Reconstruction of a Traced Neuron Using the Convex Image Segmentation Method.

Authors:  Shiwei Li; Tingwei Quan; Hang Zhou; Qing Huang; Tao Guan; Yijun Chen; Cheng Xu; Hongtao Kang; Anan Li; Ling Fu; Qingming Luo; Hui Gong; Shaoqun Zeng
Journal:  Neuroinformatics       Date:  2020-04

2.  Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy.

Authors:  Jasmine N Singh; Taylor M Nowlin; Gregory J Seedorf; Steven H Abman; Douglas P Shepherd
Journal:  J Biomed Opt       Date:  2017-07-01       Impact factor: 3.170

3.  GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population.

Authors:  Hang Zhou; Shiwei Li; Anan Li; Qing Huang; Feng Xiong; Ning Li; Jiacheng Han; Hongtao Kang; Yijun Chen; Yun Li; Huimin Lin; Yu-Hui Zhang; Xiaohua Lv; Xiuli Liu; Hui Gong; Qingming Luo; Shaoqun Zeng; Tingwei Quan
Journal:  Neuroinformatics       Date:  2021-04

4.  DeepNeuron: an open deep learning toolbox for neuron tracing.

Authors:  Zhi Zhou; Hsien-Chi Kuo; Hanchuan Peng; Fuhui Long
Journal:  Brain Inform       Date:  2018-06-06

Review 5.  The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.

Authors:  Joseph R Ecker; Daniel H Geschwind; Arnold R Kriegstein; John Ngai; Pavel Osten; Damon Polioudakis; Aviv Regev; Nenad Sestan; Ian R Wickersham; Hongkui Zeng
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

6.  Cellular anatomy of the mouse primary motor cortex.

Authors:  Rodrigo Muñoz-Castañeda; Brian Zingg; Katherine S Matho; Xiaoyin Chen; Quanxin Wang; Nicholas N Foster; Anan Li; Arun Narasimhan; Karla E Hirokawa; Bingxing Huo; Samik Bannerjee; Laura Korobkova; Chris Sin Park; Young-Gyun Park; Michael S Bienkowski; Uree Chon; Diek W Wheeler; Xiangning Li; Yun Wang; Maitham Naeemi; Peng Xie; Lijuan Liu; Kathleen Kelly; Xu An; Sarojini M Attili; Ian Bowman; Anastasiia Bludova; Ali Cetin; Liya Ding; Rhonda Drewes; Florence D'Orazi; Corey Elowsky; Stephan Fischer; William Galbavy; Lei Gao; Jesse Gillis; Peter A Groblewski; Lin Gou; Joel D Hahn; Joshua T Hatfield; Houri Hintiryan; Junxiang Jason Huang; Hideki Kondo; Xiuli Kuang; Philip Lesnar; Xu Li; Yaoyao Li; Mengkuan Lin; Darrick Lo; Judith Mizrachi; Stephanie Mok; Philip R Nicovich; Ramesh Palaniswamy; Jason Palmer; Xiaoli Qi; Elise Shen; Yu-Chi Sun; Huizhong W Tao; Wayne Wakemen; Yimin Wang; Shenqin Yao; Jing Yuan; Huiqing Zhan; Muye Zhu; Lydia Ng; Li I Zhang; Byung Kook Lim; Michael Hawrylycz; Hui Gong; James C Gee; Yongsoo Kim; Kwanghun Chung; X William Yang; Hanchuan Peng; Qingming Luo; Partha P Mitra; Anthony M Zador; Hongkui Zeng; Giorgio A Ascoli; Z Josh Huang; Pavel Osten; Julie A Harris; Hong-Wei Dong
Journal:  Nature       Date:  2021-10-06       Impact factor: 49.962

Review 7.  Smart imaging to empower brain-wide neuroscience at single-cell levels.

Authors:  Shuxia Guo; Jie Xue; Jian Liu; Xiangqiao Ye; Yichen Guo; Di Liu; Xuan Zhao; Feng Xiong; Xiaofeng Han; Hanchuan Peng
Journal:  Brain Inform       Date:  2022-05-11

8.  Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains.

Authors:  Shengdian Jiang; Yimin Wang; Lijuan Liu; Liya Ding; Zongcai Ruan; Hong-Wei Dong; Giorgio A Ascoli; Michael Hawrylycz; Hongkui Zeng; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2022-02-19

9.  Efficient metadata mining of web-accessible neural morphologies.

Authors:  Masood A Akram; Bengt Ljungquist; Giorgio A Ascoli
Journal:  Prog Biophys Mol Biol       Date:  2021-05-19       Impact factor: 3.667

10.  An imaging analysis protocol to trace, quantify, and model multi-signal neuron morphology.

Authors:  Sumit Nanda; Shatabdi Bhattacharjee; Daniel N Cox; Giorgio A Ascoli
Journal:  STAR Protoc       Date:  2021-06-02
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