| Literature DB >> 28358908 |
Hsiang-Wei Kuo1, Chia-Lung Shih1, Jieh-Hen Tsung1, Sheng-Wen Liu1, Shih-Kai Chu2, Hsin-Chou Yang2, Hsiao-Hui Tsou3,4, Zih-Hsiang Wang5, Andrew C H Chen6,7, Yu-Li Liu1,8.
Abstract
Heroin dependent patients have a high incidence of HIV infection. In contrast to the gene expression method, we developed a systemic correlation analysis method built upon the results of pharmacogenomics study in a methadone maintenance treatment (MMT) cohort consisting of 344 Taiwanese heroin dependent patients. We identified genetic variants and their encoding proteins that may be involved with HIV infection and MMT treatment outcome. Cadherin 2 (CDH2) genetic determinants were identified through the genome-wide pharmacogenomic study. We found significant correlations among HIV infection status, plasma levels of CDH2, cytokine IL-7, ADAM10, and the treatment responses to methadone. Two single nucleotide polymorphisms located within CDH2 gene showed associations with blood pressure and plasma CDH2 concentration. Plasma concentration of CDH2 showed correlations with the level of cytokine IL-7, status of HIV infection, and urine morphine test result. Plasma level of IL-7 was correlated with corrected QT interval (QTc) and gooseflesh skin withdrawal symptom score, while level of ADAM10 was correlated with plasma concentrations of vitamin D metabolite, nicotine metabolite, and R-methadone. The results suggest a novel network involving HIV infection and methadone treatment outcome.Entities:
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Year: 2017 PMID: 28358908 PMCID: PMC5373543 DOI: 10.1371/journal.pone.0174647
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
General demography of methadone maintenance treatment patients.
| Variable | n | Mean ± SD | % |
|---|---|---|---|
| Age (year) | 344 | 38.16 ± 7.69 | |
| Gender (Male) | 281 | 81.69 | |
| BMI (kg/m2) | 341 | 23.64 ± 3.52 | |
| Methadone dosage (mg/day) | 344 | 55.22 ± 28.47 | |
| Systolic blood pressure (mmHg) | 331 | 125.51 ± 18.12 | |
| Diastolic blood pressure (mmHg) | 331 | 76.69 ± 12.39 | |
| Plasma CDH2 (ng/ml) | 344 | 16.48 ± 13.11 | |
| Plasma ADAM10 (ng/ml) | 341 | 26.95 ± 6.35 | |
| Plasma IL-7 (pg/ml) | 339 | 6.65 ± 8.25 | |
| Urine morphine test (+) | 173 | 50.58 | |
| HIV (+) | 76 | 22.55 | |
| HCV (+) | 313 | 94.56 |
BMI, Body Mass Index; HIV, Human immunodeficiency virus; HCV, Hepatitis C virus; (+), positive in the test; SD, standard deviation.
Fig 1A schematic design from a pharmacogenomic study in methadone maintenance therapy.
This design has led to systemic discovery of some hidden pathways among plasma IL-7, ADAM10 and CDH2, and their contributions to the methadone treatment responses.
Association analyses between SNPs in CDH2 gene and blood pressure or plasma level of CDH2.
| SNP | Systolic blood pressure | Diastolic blood pressure | Plasma CDH2 level | ||||||
|---|---|---|---|---|---|---|---|---|---|
| n | Mean ± SD | n | Mean ± SD | n | Mean ± SD | ||||
| rs8094439 (Intron 2) | |||||||||
| GG | 227 | 125.98 ± 17.45 | 227 | 77.21 ± 11.88 | 236 | 15.98 ± 13.21 | |||
| AG | 92 | 122.72 ± 17.85 | (0.06) | 92 | 74.28 ± 12.49 | 95 | 15.61 ± 11.59 | ||
| AA | 11 | 140.55 ± 26.57 | 11 | 87.45 ± 15.8 | 12 | 31.21 ± 13.69 | |||
| rs17446819 (Intron 2) | |||||||||
| AA | 227 | 125.85 ± 17.45 | 227 | 77.22 ± 11.87 | 235 | 16 ± 13.27 | |||
| AC | 91 | 122.95 ± 17.81 | (0.06) | 91 | 74.46 ± 12.44 | 94 | 15.59 ± 11.65 | ||
| CC | 11 | 140.5 ± 26.57 | 11 | 87.45 ± 15.8 | 12 | 31.21 ± 13.69 | |||
SD, standard deviation.
a Intron2 is according to the isoform of CDH2 mRNA (NM_001792).
b General linear model of permutation P-value.
c General linear model of permutation P-value after adjusted for all other taken medications.
Parenthesis, False Discovery Rate (FDR). Bold font, P < 0.05.
Fig 2Correlation matrix heatmap of the study variables.
Spearman correlation coefficients are presented by a blue-white-red color scheme. Dark red indicates a more positive correlation; dark blue indicates a more negative correlation; white indicates no correlation.
Multivariate regression analyses of the plasma CDH2 level (ng/ml).
| Variable | β | S.E. | Adjusted | Partial r2 | VIF | |
|---|---|---|---|---|---|---|
| Plasma IL-7 (pg/ml) | -0.32 | 0.09 | 0.036 | 1.03 | ||
| HIV (+ / -) | -5.35 | 1.73 | 0.032 | 1.04 | ||
| Urine morphine (+ / -) | -3.24 | 1.47 | 0.012 | 1.04 | ||
| Cotinine Concentration (ng/ml) | 0.01 | 0.004 | 0.06 | 0.07 | 0.012 | 1.03 |
| Heart rate (beats/min) | 0.11 | 0.06 | 0.07 | 0.06 | 0.013 | 1.05 |
| Systolic blood pressure (mmHg) | 0.05 | 0.04 | 0.2 | 0.29 | 0.005 | 1.04 |
a n = 319, F = 6.38, P<0.0001, adjusted r2 = 9.24%.
b Permutation P-value.
c Permutation P-value adjusted for all other taken medications.
Bold font, P < 0.05. HIV, human immunodeficiency virus; β, stepwise regression coefficient; S.E., standard error of regression coefficient; VIF, variance inflation factor.
Plasma level of CDH2 and IL-7 were associated with HIV infection status and the urine morphine test outcome.
| Variable | Plasma CDH2 level (ng/ml) | Plasma IL-7 level (pg/ml) | ||||
|---|---|---|---|---|---|---|
| n | Mean ± SD | n | Mean ± SD | |||
| HIV (+) | 76 | 12.97 ± 10.79 | 76 | 4.59 ± 5.77 | ||
| HIV (-) | 261 | 17.41 ± 13.64 | 257 | 7.31 ± 8.83 | ||
| 0.31 | ||||||
| Morphine (+) | 173 | 14.59 ± 10.82 | 170 | 7.14 ± 8.69 | 0.38 | |
| Morphine (-) | 169 | 18.49 ± 14.92 | 167 | 6.23 ± 7.80 | ||
a General linear model of permutation P-value.
b Permutation P-value adjusted for all other taken medications.
Bold font, P < 0.05. HIV, human immunodeficiency virus; SD, standard deviation.