Literature DB >> 28358125

A golden goat genome.

Kim C Worley1.   

Abstract

The newly described de novo goat genome sequence is the most contiguous diploid vertebrate assembly generated thus far using whole-genome assembly and scaffolding methods. The contiguity of this assembly is approaching that of the finished human and mouse genomes and suggests an affordable roadmap to high-quality references for thousands of species.

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Year:  2017        PMID： 28358125     DOI： 10.1038/ng.3824

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  15 in total

Review 1.  Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class.

Authors:  Erich D Jarvis
Journal:  Annu Rev Anim Biosci       Date:  2016       Impact factor: 8.923

2.  Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.

Authors:  Derek M Bickhart; Benjamin D Rosen; Sergey Koren; Brian L Sayre; Alex R Hastie; Saki Chan; Joyce Lee; Ernest T Lam; Ivan Liachko; Shawn T Sullivan; Joshua N Burton; Heather J Huson; John C Nystrom; Christy M Kelley; Jana L Hutchison; Yang Zhou; Jiajie Sun; Alessandra Crisà; F Abel Ponce de León; John C Schwartz; John A Hammond; Geoffrey C Waldbieser; Steven G Schroeder; George E Liu; Maitreya J Dunham; Jay Shendure; Tad S Sonstegard; Adam M Phillippy; Curtis P Van Tassell; Timothy P L Smith
Journal:  Nat Genet       Date:  2017-03-06       Impact factor: 38.330

3.  Genetics: Decoding a national treasure.

Authors:  Kim C Worley; Richard A Gibbs
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

Review 4.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

5.  A new initiative on precision medicine.

Authors:  Francis S Collins; Harold Varmus
Journal:  N Engl J Med       Date:  2015-01-30       Impact factor: 91.245

6.  De novo assembly and phasing of a Korean human genome.

Authors:  Jeong-Sun Seo; Arang Rhie; Junsoo Kim; Sangjin Lee; Min-Hwan Sohn; Chang-Uk Kim; Alex Hastie; Han Cao; Ji-Young Yun; Jihye Kim; Junho Kuk; Gun Hwa Park; Juhyeok Kim; Hanna Ryu; Jongbum Kim; Mira Roh; Jeonghun Baek; Michael W Hunkapiller; Jonas Korlach; Jong-Yeon Shin; Changhoon Kim
Journal:  Nature       Date:  2016-10-05       Impact factor: 49.962

7.  Finishing the euchromatic sequence of the human genome.

Authors: 
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

8.  Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Authors:  Keith R Bradnam; Joseph N Fass; Anton Alexandrov; Paul Baranay; Michael Bechner; Inanç Birol; Sébastien Boisvert; Jarrod A Chapman; Guillaume Chapuis; Rayan Chikhi; Hamidreza Chitsaz; Wen-Chi Chou; Jacques Corbeil; Cristian Del Fabbro; T Roderick Docking; Richard Durbin; Dent Earl; Scott Emrich; Pavel Fedotov; Nuno A Fonseca; Ganeshkumar Ganapathy; Richard A Gibbs; Sante Gnerre; Elénie Godzaridis; Steve Goldstein; Matthias Haimel; Giles Hall; David Haussler; Joseph B Hiatt; Isaac Y Ho; Jason Howard; Martin Hunt; Shaun D Jackman; David B Jaffe; Erich D Jarvis; Huaiyang Jiang; Sergey Kazakov; Paul J Kersey; Jacob O Kitzman; James R Knight; Sergey Koren; Tak-Wah Lam; Dominique Lavenier; François Laviolette; Yingrui Li; Zhenyu Li; Binghang Liu; Yue Liu; Ruibang Luo; Iain Maccallum; Matthew D Macmanes; Nicolas Maillet; Sergey Melnikov; Delphine Naquin; Zemin Ning; Thomas D Otto; Benedict Paten; Octávio S Paulo; Adam M Phillippy; Francisco Pina-Martins; Michael Place; Dariusz Przybylski; Xiang Qin; Carson Qu; Filipe J Ribeiro; Stephen Richards; Daniel S Rokhsar; J Graham Ruby; Simone Scalabrin; Michael C Schatz; David C Schwartz; Alexey Sergushichev; Ted Sharpe; Timothy I Shaw; Jay Shendure; Yujian Shi; Jared T Simpson; Henry Song; Fedor Tsarev; Francesco Vezzi; Riccardo Vicedomini; Bruno M Vieira; Jun Wang; Kim C Worley; Shuangye Yin; Siu-Ming Yiu; Jianying Yuan; Guojie Zhang; Hao Zhang; Shiguo Zhou; Ian F Korf
Journal:  Gigascience       Date:  2013-07-22       Impact factor: 6.524

9.  Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

Authors:  Yang Dong; Min Xie; Yu Jiang; Nianqing Xiao; Xiaoyong Du; Wenguang Zhang; Gwenola Tosser-Klopp; Jinhuan Wang; Shuang Yang; Jie Liang; Wenbin Chen; Jing Chen; Peng Zeng; Yong Hou; Chao Bian; Shengkai Pan; Yuxiang Li; Xin Liu; Wenliang Wang; Bertrand Servin; Brian Sayre; Bin Zhu; Deacon Sweeney; Rich Moore; Wenhui Nie; Yongyi Shen; Ruoping Zhao; Guojie Zhang; Jinquan Li; Thomas Faraut; James Womack; Yaping Zhang; James Kijas; Noelle Cockett; Xun Xu; Shuhong Zhao; Jun Wang; Wen Wang
Journal:  Nat Biotechnol       Date:  2012-12-23       Impact factor: 54.908

10.  Long-read sequence assembly of the gorilla genome.

Authors:  David Gordon; John Huddleston; Mark J P Chaisson; Christopher M Hill; Zev N Kronenberg; Katherine M Munson; Maika Malig; Archana Raja; Ian Fiddes; LaDeana W Hillier; Christopher Dunn; Carl Baker; Joel Armstrong; Mark Diekhans; Benedict Paten; Jay Shendure; Richard K Wilson; David Haussler; Chen-Shan Chin; Evan E Eichler
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728
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  7 in total

1.  A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Authors:  Emily L Clark; Stephen J Bush; Mary E B McCulloch; Iseabail L Farquhar; Rachel Young; Lucas Lefevre; Clare Pridans; Hiu G Tsang; Chunlei Wu; Cyrus Afrasiabi; Mick Watson; C Bruce Whitelaw; Tom C Freeman; Kim M Summers; Alan L Archibald; David A Hume
Journal:  PLoS Genet       Date:  2017-09-15       Impact factor: 5.917

2.  Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression.

Authors:  Stephen J Bush; Mary E B McCulloch; Charity Muriuki; Mazdak Salavati; Gemma M Davis; Iseabail L Farquhar; Zofia M Lisowski; Alan L Archibald; David A Hume; Emily L Clark
Journal:  G3 (Bethesda)       Date:  2019-02-07       Impact factor: 3.154

Review 3.  Models of osteoarthritis: the good, the bad and the promising.

Authors:  P J Cope; K Ourradi; Y Li; M Sharif
Journal:  Osteoarthritis Cartilage       Date:  2018-10-25       Impact factor: 6.576

4.  Towards the Complete Goat Pan-Genome by Recovering Missing Genomic Segments From the Reference Genome.

Authors:  Ran Li; Weiwei Fu; Rui Su; Xiaomeng Tian; Duo Du; Yue Zhao; Zhuqing Zheng; Qiuming Chen; Shan Gao; Yudong Cai; Xihong Wang; Jinquan Li; Yu Jiang
Journal:  Front Genet       Date:  2019-11-15       Impact factor: 4.599

Review 5.  Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).

Authors:  Alessio Iannucci; Alexey I Makunin; Artem P Lisachov; Claudio Ciofi; Roscoe Stanyon; Marta Svartman; Vladimir A Trifonov
Journal:  Genes (Basel)       Date:  2021-01-19       Impact factor: 4.096

6.  A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus).

Authors:  Charity Muriuki; Stephen J Bush; Mazdak Salavati; Mary E B McCulloch; Zofia M Lisowski; Morris Agaba; Appolinaire Djikeng; David A Hume; Emily L Clark
Journal:  Front Genet       Date:  2019-11-04       Impact factor: 4.599

7.  Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0).

Authors:  Mazdak Salavati; Alex Caulton; Richard Clark; Iveta Gazova; Timothy P L Smith; Kim C Worley; Noelle E Cockett; Alan L Archibald; Shannon M Clarke; Brenda M Murdoch; Emily L Clark
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599
  7 in total

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