Literature DB >> 28351337

Zika virus NS5 protein potential inhibitors: an enhanced in silico approach in drug discovery.

Pritika Ramharack1, Mahmoud E S Soliman1,2,3,4.   

Abstract

The re-emerging Zika virus (ZIKV) is an arthropod-borne virus that has been described to have explosive potential as a worldwide pandemic. The initial transmission of the virus was through a mosquito vector, however, evolving modes of transmission has allowed the spread of the disease over continents. The virus has already been linked to irreversible chronic central nervous system conditions. The concerns of the scientific and clinical community are the consequences of Zika viral mutations, thus suggesting the urgent need for viral inhibitors. There have been large strides in vaccine development against the virus but there are still no FDA approved drugs available. Rapid rational drug design and discovery research is fundamental in the production of potent inhibitors against the virus that will not just mask the virus, but destroy it completely. In silico drug design allows for this prompt screening of potential leads, thus decreasing the consumption of precious time and resources. This study demonstrates an optimized and proven screening technique in the discovery of two potential small molecule inhibitors of ZIKV Methyltransferase and RNA dependent RNA polymerase. This in silico 'per-residue energy decomposition pharmacophore' virtual screening approach will be critical in aiding scientists in the discovery of not only effective inhibitors of Zika viral targets, but also a wide range of anti-viral agents.

Entities:  

Keywords:  NS5 protein potential inhibitors; Zika virus per-residue decomposition based pharmacophore; binding free energy; molecular dynamic simulations; virtual screening

Mesh:

Substances:

Year:  2017        PMID: 28351337     DOI: 10.1080/07391102.2017.1313175

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  21 in total

1.  Delving into the Characteristic Features of "Menace" Mycobacterium tuberculosis Homologs: A Structural Dynamics and Proteomics Perspectives.

Authors:  Adeniyi T Adewumi; Pritika Ramharack; Opeyemi S Soremekun; Mahmoud E S Soliman
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

Review 2.  A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika.

Authors:  Shobana Sundar; Shanmughavel Piramanayagam; Jeyakumar Natarajan
Journal:  Virus Genes       Date:  2022-04-08       Impact factor: 2.332

3.  Discovery of new drug indications for COVID-19: A drug repurposing approach.

Authors:  Priyanka Kumari; Bikram Pradhan; Maria Koromina; George P Patrinos; Kristel Van Steen
Journal:  PLoS One       Date:  2022-05-24       Impact factor: 3.752

4.  Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase.

Authors:  Aicha Gharbi-Ayachi; Sridhar Santhanakrishnan; Yee Hwa Wong; Kitti W K Chan; Siok Thing Tan; Roderick W Bates; Subhash G Vasudevan; Abbas El Sahili; Julien Lescar
Journal:  J Virol       Date:  2020-10-14       Impact factor: 5.103

5.  The Dual-Targeting Activity of the Metabolite Substrate of Para-amino Salicyclic Acid in the Mycobacterial Folate Pathway: Atomistic and Structural Perspectives.

Authors:  Clement Agoni; Pritika Ramharack; Elliasu Y Salifu; Mahmoud E S Soliman
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

Review 6.  Advances in Developing Therapies to Combat Zika Virus: Current Knowledge and Future Perspectives.

Authors:  Ashok Munjal; Rekha Khandia; Kuldeep Dhama; Swati Sachan; Kumaragurubaran Karthik; Ruchi Tiwari; Yashpal S Malik; Deepak Kumar; Raj K Singh; Hafiz M N Iqbal; Sunil K Joshi
Journal:  Front Microbiol       Date:  2017-08-03       Impact factor: 5.640

7.  Male germ cells support long-term propagation of Zika virus.

Authors:  Christopher L Robinson; Angie C N Chong; Alison W Ashbrook; Ginnie Jeng; Julia Jin; Haiqi Chen; Elizabeth I Tang; Laura A Martin; Rosa S Kim; Reyn M Kenyon; Eileen Do; Joseph M Luna; Mohsan Saeed; Lori Zeltser; Harold Ralph; Vanessa L Dudley; Marc Goldstein; Charles M Rice; C Yan Cheng; Marco Seandel; Shuibing Chen
Journal:  Nat Commun       Date:  2018-05-29       Impact factor: 14.919

8.  Development of a fluorescence-based method for the rapid determination of Zika virus polymerase activity and the screening of antiviral drugs.

Authors:  Yanira Sáez-Álvarez; Armando Arias; Carmen Del Águila; Rubén Agudo
Journal:  Sci Rep       Date:  2019-04-01       Impact factor: 4.379

Review 9.  Complementary Mechanisms Potentially Involved in the Pathology of Zika Virus.

Authors:  Chet Raj Ojha; Myosotys Rodriguez; Jessica Lapierre; Mohan Kumar Muthu Karuppan; Heather Branscome; Fatah Kashanchi; Nazira El-Hage
Journal:  Front Immunol       Date:  2018-10-15       Impact factor: 7.561

10.  Using bioinformatics tools for the discovery of Dengue RNA-dependent RNA polymerase inhibitors.

Authors:  Nomagugu B Nncube; Pritika Ramharack; Mahmoud E S Soliman
Journal:  PeerJ       Date:  2018-09-25       Impact factor: 2.984

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