Literature DB >> 28349465

Transcriptome-Wide Mapping of N 1-Methyladenosine Methylome.

Xiaoyu Li1, Jinying Peng1, Chengqi Yi2,3.   

Abstract

N 1-Methyladenosine (m1A) is a prevalent posttranscriptional RNA modification and commonly found in tRNA and rRNA. Very recent works have also demonstrated the prevalence of m1A in mammalian mRNA. Hence, high-throughput methods that allow transcriptome-wide mapping of m1A will be important for further functional investigations. Here, we describe a technique called "m1A-ID-Seq", which is based on m1A immunoprecipitation and the inherent ability of m1A to stall reverse transcription, to map m1A in the transcriptome. Utilizing this technique, highly confident m1A peaks can be obtained on a transcriptome-wide level.

Entities:  

Keywords:  AlkB; Demethylase; Epitranscriptome; N 1-Methyladenosine (m1A); RNA epigenetics; Transcriptome-wide profiling; m1A-ID-Seq

Mesh:

Substances:

Year:  2017        PMID: 28349465     DOI: 10.1007/978-1-4939-6807-7_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  ICBS 2017 in Shanghai-Illuminating Life with Chemical Innovation.

Authors:  Qi Zhang; Jingyu Zhang; Evripidis Gavathiotis
Journal:  ACS Chem Biol       Date:  2018-05-02       Impact factor: 5.100

Review 2.  Epitranscriptomic Code and Its Alterations in Human Disease.

Authors:  Rajashekar Varma Kadumuri; Sarath Chandra Janga
Journal:  Trends Mol Med       Date:  2018-08-14       Impact factor: 11.951

Review 3.  RNA Metabolism Guided by RNA Modifications: The Role of SMUG1 in rRNA Quality Control.

Authors:  Lisa Lirussi; Özlem Demir; Panpan You; Antonio Sarno; Rommie E Amaro; Hilde Nilsen
Journal:  Biomolecules       Date:  2021-01-08
  3 in total

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