Literature DB >> 28349460

Statistical Methods for Transcriptome-Wide Analysis of RNA Methylation by Bisulfite Sequencing.

Brian J Parker1.   

Abstract

For the transcriptome-wide detection and quantification of the 5-methylcytosine (m5C) methylation modification of RNA, one experimental approach is via bisulfite conversion. In this chapter we discuss statistical methods, and a corresponding computational pipeline, to perform transcriptome-wide differential m5C methylation analysis between RNA samples, specialized for this assay.

Entities:  

Keywords:  5-methylcytosine; Bisulfite conversion; Differential methylation; Epitranscriptomics; High-throughput sequencing; RNA methylation

Mesh:

Substances:

Year:  2017        PMID: 28349460     DOI: 10.1007/978-1-4939-6807-7_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Advances in methods and software for RNA cytosine methylation analysis.

Authors:  Xiguang Xu; Xiaoran Wei; Hehuang Xie
Journal:  Genomics       Date:  2019-10-31       Impact factor: 5.736

Review 2.  Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update.

Authors:  Yuri Motorin; Virginie Marchand
Journal:  Genes (Basel)       Date:  2021-02-16       Impact factor: 4.096

  2 in total

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