Literature DB >> 28349436

Quantum Chemical Mass Spectrometry: Verification and Extension of the Mobile Proton Model for Histidine.

Julie Cautereels1, Frank Blockhuys2.   

Abstract

The quantum chemical mass spectrometry for materials science (QCMS2) method is used to verify the proposed mechanism for proton transfer - the Mobile Proton Model (MPM) - by histidine for ten XHS tripeptides, based on quantum chemical calculations at the DFT/B3LYP/6-311+G* level of theory. The fragmentations of the different intermediate structures in the MPM mechanism are studied within the QCMS2 framework, and the energetics of the proposed mechanism itself and those of the fragmentations of the intermediate structures are compared, leading to the computational confirmation of the MPM. In addition, the calculations suggest that the mechanism should be extended from considering only the formation of five-membered ring intermediates to include larger-ring intermediates. Graphical Abstract ᅟ.

Entities:  

Keywords:  Density functional theory; Mobile proton model; Quantum chemical mass spectrometry (QCMS2); Tripeptides

Year:  2017        PMID: 28349436     DOI: 10.1007/s13361-017-1636-9

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  37 in total

Review 1.  Fragmentation pathways of protonated peptides.

Authors:  Béla Paizs; Sándor Suhai
Journal:  Mass Spectrom Rev       Date:  2005 Jul-Aug       Impact factor: 10.946

2.  A mechanistic investigation of the enhanced cleavage at histidine in the gas-phase dissociation of protonated peptides.

Authors:  George Tsaprailis; Hari Nair; Wenqing Zhong; Krishnamoorthy Kuppannan; Jean H Futrell; Vicki H Wysocki
Journal:  Anal Chem       Date:  2004-04-01       Impact factor: 6.986

3.  The relative charge ratio between C and N atoms in amide bond acts as a key factor to determine peptide fragment efficiency in different charge states.

Authors:  Feng Sun; Wansong Zong; Rutao Liu; Meijie Wang; Pengjun Zhang; Qifei Xu
Journal:  J Am Soc Mass Spectrom       Date:  2010-07-08       Impact factor: 3.109

4.  The mobile proton hypothesis in fragmentation of protonated peptides: a perspective.

Authors:  Robert Boyd; Arpád Somogyi
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-29       Impact factor: 3.109

5.  Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns.

Authors:  Yingying Huang; Joseph M Triscari; George C Tseng; Ljiljana Pasa-Tolic; Mary S Lipton; Richard D Smith; Vicki H Wysocki
Journal:  Anal Chem       Date:  2005-09-15       Impact factor: 6.986

Review 6.  Protein identification by tandem mass spectrometry and sequence database searching.

Authors:  Alexey I Nesvizhskii
Journal:  Methods Mol Biol       Date:  2007

7.  Chemical ionization of amino acids.

Authors:  C W Tsang; A G Harrison
Journal:  J Am Chem Soc       Date:  1976-03-17       Impact factor: 15.419

8.  The effect of protonation site on bond strengths in simple peptides: Application of Ab initio and modified neglect of differential overlap bond orders and modified neglect of differential overlap energy partitioning.

Authors:  A Somogyi; V H Wysocki; I Mayer
Journal:  J Am Soc Mass Spectrom       Date:  1994-08       Impact factor: 3.109

9.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

10.  Proton-driven amide bond-cleavage pathways of gas-phase peptide ions lacking mobile protons.

Authors:  Benjamin J Bythell; Sándor Suhai; Arpád Somogyi; Béla Paizs
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

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  2 in total

1.  Comment on: "Quantum Chemical Mass Spectrometry: Verification and Extension of the Mobile Proton Model for Histidine" by Julie Cautereels and Frank Blockhuys, J. Am. Soc. Mass Spectrom. 28, 1227-1235 (2017).

Authors:  Benjamin J Bythell
Journal:  J Am Soc Mass Spectrom       Date:  2017-12       Impact factor: 3.109

Review 2.  Strategies for structure elucidation of small molecules based on LC-MS/MS data from complex biological samples.

Authors:  Zhitao Tian; Fangzhou Liu; Dongqin Li; Alisdair R Fernie; Wei Chen
Journal:  Comput Struct Biotechnol J       Date:  2022-09-07       Impact factor: 6.155

  2 in total

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