Literature DB >> 28339201

High-Throughput in Silico Structure Validation and Revision of Halogenated Natural Products Is Enabled by Parametric Corrections to DFT-Computed 13C NMR Chemical Shifts and Spin-Spin Coupling Constants.

Andrei G Kutateladze1, D Sai Reddy1.   

Abstract

Halogenated natural products constitute diverse and promising feedstock for molecular pharmaceuticals. However, their solution-structure elucidation by NMR presents several challenges, including the lack of fast methods to compute 13C chemical shifts for carbons bearing heavy atoms. We show that parametric corrections to DFT-computed chemical shifts in conjunction with rff-computed spin-spin coupling constants allow for fast and reliable screening of a large number of reported halogenated natural products, resulting in expedient structure validation or revision. In this paper, we examine more than 100 structures of halogenated terpenoids and other natural products with the new parametric approach and demonstrate that the accuracy of the combined method is sufficient to identify misassignments and suggest revisions in most cases (16 structures are revised). As the 1D 1H and 13C NMR data are ubiquitous and most routinely used in solution structure elucidation, this fast and efficient two-criterion method (nuclear spin-spin coupling and 13C chemical shifts) which we term DU8+ is recommended as the first essential step in structure assignment and validation.

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Year:  2017        PMID: 28339201     DOI: 10.1021/acs.joc.7b00188

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  14 in total

1.  Photoinitiated Cascade for Rapid Access to Pyrroloquinazolinone Core of Vasicinone, Luotonins, and Related Alkaloids.

Authors:  D Sai Reddy; Andrei G Kutateladze
Journal:  Org Lett       Date:  2019-04-01       Impact factor: 6.005

Review 2.  Recent trends in the structural revision of natural products.

Authors:  Bhuwan Khatri Chhetri; Serge Lavoie; Anne Marie Sweeney-Jones; Julia Kubanek
Journal:  Nat Prod Rep       Date:  2018-06-20       Impact factor: 13.423

3.  Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea.

Authors:  Pengcheng Yan; Ge Li; Chaojie Wang; Jianzhang Wu; Zhongmin Sun; Gary E Martin; Xiao Wang; Mikhail Reibarkh; Josep Saurí; Kirk R Gustafson
Journal:  Org Lett       Date:  2019-09-06       Impact factor: 6.005

4.  Stereochemical revision of xylogranatin F by GIAO and DU8+ NMR calculations.

Authors:  Yannan Liu; Tina A Holt; Andrei Kutateladze; Timothy R Newhouse
Journal:  Chirality       Date:  2020-03-03       Impact factor: 2.437

5.  New Techniques of Structure Elucidation for Sesquiterpenes.

Authors:  Julio C Pardo-Novoa; Carlos M Cerda-García-Rojas
Journal:  Prog Chem Org Nat Prod       Date:  2021

Review 6.  Quantum mechanical NMR full spin analysis in pharmaceutical identity testing and quality control.

Authors:  Prabhakar S Achanta; Birgit U Jaki; James B McAlpine; J Brent Friesen; Matthias Niemitz; Shao-Nong Chen; Guido F Pauli
Journal:  J Pharm Biomed Anal       Date:  2020-09-08       Impact factor: 3.935

7.  Pinnatifidenyne-Derived Ethynyl Oxirane Acetogenins from Laurencia viridis.

Authors:  Adrián Morales-Amador; Caterina R de Vera; Olivia Márquez-Fernández; Antonio Hernández Daranas; José M Padrón; José J Fernández; María L Souto; Manuel Norte
Journal:  Mar Drugs       Date:  2017-12-29       Impact factor: 5.118

8.  Structure Determination of a Chloroenyne from Laurencia majuscula Using Computational Methods and Total Synthesis.

Authors:  Erin D Shepherd; Bryony S Dyson; William E Hak; Quynh Nhu N Nguyen; Miseon Lee; Mi Jung Kim; Te-Ik Sohn; Deukjoon Kim; Jonathan W Burton; Robert S Paton
Journal:  J Org Chem       Date:  2019-04-12       Impact factor: 4.354

Review 9.  The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research.

Authors:  James B McAlpine; Shao-Nong Chen; Andrei Kutateladze; John B MacMillan; Giovanni Appendino; Andersson Barison; Mehdi A Beniddir; Maique W Biavatti; Stefan Bluml; Asmaa Boufridi; Mark S Butler; Robert J Capon; Young H Choi; David Coppage; Phillip Crews; Michael T Crimmins; Marie Csete; Pradeep Dewapriya; Joseph M Egan; Mary J Garson; Grégory Genta-Jouve; William H Gerwick; Harald Gross; Mary Kay Harper; Precilia Hermanto; James M Hook; Luke Hunter; Damien Jeannerat; Nai-Yun Ji; Tyler A Johnson; David G I Kingston; Hiroyuki Koshino; Hsiau-Wei Lee; Guy Lewin; Jie Li; Roger G Linington; Miaomiao Liu; Kerry L McPhail; Tadeusz F Molinski; Bradley S Moore; Joo-Won Nam; Ram P Neupane; Matthias Niemitz; Jean-Marc Nuzillard; Nicholas H Oberlies; Fernanda M M Ocampos; Guohui Pan; Ronald J Quinn; D Sai Reddy; Jean-Hugues Renault; José Rivera-Chávez; Wolfgang Robien; Carla M Saunders; Thomas J Schmidt; Christoph Seger; Ben Shen; Christoph Steinbeck; Hermann Stuppner; Sonja Sturm; Orazio Taglialatela-Scafati; Dean J Tantillo; Robert Verpoorte; Bin-Gui Wang; Craig M Williams; Philip G Williams; Julien Wist; Jian-Min Yue; Chen Zhang; Zhengren Xu; Charlotte Simmler; David C Lankin; Jonathan Bisson; Guido F Pauli
Journal:  Nat Prod Rep       Date:  2018-07-13       Impact factor: 13.423

10.  Isomerism and dynamic behavior of bridging phosphaalkynes bound to a dicopper complex.

Authors:  Amélie Nicolay; Micah S Ziegler; David W Small; Rebecca Grünbauer; Manfred Scheer; T Don Tilley
Journal:  Chem Sci       Date:  2019-12-19       Impact factor: 9.825

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