Literature DB >> 2833707

DNA footprinting with hydroxyl radical.

T D Tullius1.   

Abstract

High resolution images of proteins bound to DNA can be achieved through the use of a simple inorganic chemical system that produces the hydroxyl radical.

Entities:  

Mesh：

Substances：

Year:  1988        PMID： 2833707     DOI： 10.1038/332663a0

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


  18 in total

1.  Reproducible and inexpensive probe preparation for oligonucleotide arrays.

Authors:  Y Zhang; B D Price; S Tetradis; S Chakrabarti; G Maulik; G M Makrigiorgos
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

2.  The DNA architectural protein HMGB1 displays two distinct modes of action that promote enhanceosome assembly.

Authors:  Katherine Mitsouras; Ben Wong; Charina Arayata; Reid C Johnson; Michael Carey
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

3.  Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.

Authors:  Sajad Hussain Syed; Damien Goutte-Gattat; Nils Becker; Sam Meyer; Manu Shubhdarshan Shukla; Jeffrey J Hayes; Ralf Everaers; Dimitar Angelov; Jan Bednar; Stefan Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  Mapping three guanine oxidation products along DNA following exposure to three types of reactive oxygen species.

Authors:  Brock Matter; Christopher L Seiler; Kristopher Murphy; Xun Ming; Jianwei Zhao; Bruce Lindgren; Roger Jones; Natalia Tretyakova
Journal:  Free Radic Biol Med       Date:  2018-04-25       Impact factor: 7.376

5.  An in vitro transcription assay for probing drug-DNA interactions at individual drug sites.

Authors:  D R Phillips; C M Cullinane; D M Crothers
Journal:  Mol Biotechnol       Date:  1998-08       Impact factor: 2.695

6.  Hydroxyl radical "footprinting" of RNA: application to pre-mRNA splicing complexes.

Authors:  X D Wang; R A Padgett
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

Review 7.  Chemical nucleases as probes for studying DNA-protein interactions.

Authors:  A G Papavassiliou
Journal:  Biochem J       Date:  1995-01-15       Impact factor: 3.857

8.  Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.

Authors:  Magdalena A Jonikas; Randall J Radmer; Alain Laederach; Rhiju Das; Samuel Pearlman; Daniel Herschlag; Russ B Altman
Journal:  RNA       Date:  2009-02       Impact factor: 4.942

9.  DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone.

Authors:  B Balasubramanian; W K Pogozelski; T D Tullius
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

10.  Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions.

Authors:  Keiji Takamoto; Mark R Chance; Michael Brenowitz
Journal:  Nucleic Acids Res       Date:  2004-08-19       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.