| Literature DB >> 28335783 |
Yanhua Li1, Jiuping Wang2, Juan Wang1, Yunfeng Xiao3, Bin Xu4, Hongwei Li1, Liu Yang1, Xiaoke Hao5, Yueyun Ma6.
Abstract
BACKGROUND: Chronic HCV Patients taking PEG-IFN-α/R from different ethnic groups have different probabilities of reaching a sustained viral response (SVR). There are many influence factors, such as HCV genotype, IL-28B single-nucleotide polymorphisms (SNP), Fibrosis 4 index (FIB-4), and aspartate aminotransferase-to-platelet ratio index (APRI) score. But the baseline factors in relation to treatment outcome was still not much clear.Entities:
Keywords: Chronic hepatitis C; Cirrhosis; HCV subtype; Individualization; Interleukin 28; Single nucleotide polymorphism
Mesh:
Substances:
Year: 2017 PMID: 28335783 PMCID: PMC5364675 DOI: 10.1186/s12985-017-0708-6
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Clinical characteristic of patients with different HCV genotypes
| HCV Genotype | No. | Age (y), range | Sex (No. of Patients, %) | Viral load (106 IU/mL), range | ALT (U/L), range | AST (U/L), range | |
|---|---|---|---|---|---|---|---|
| Male | Female | ||||||
| 1a | 12 | 39.67 (24–60) | 7 (58.33) | 5 (41.67) | 2.33 (0.01–29.90) | 58.17 (19–249) | 37.08 (10–157) |
| 1b | 111 | 46.81 (20–79) | 52 (47.27) | 58 (52.73) | 1.62 (0.02–46.1) | 50.15 (13–392) | 44.96 (16–453) |
| 2a | 89 | 50.45 (22–80) | 40 (44.94) | 49 (55.06) | 2.60 (0.00–18.10) | 49.38 (12–554) | 35.25 (15–205) |
| 2b | 1 | 54.00 (54–54) | 0 (100.00) | 1 (0.00) | 1.08 | 286.00 | 351.00 |
| 3a | 11 | 37.91 (25–53) | 8 (72.73) | 3 (27.27) | 5.52 (0.21–29.5) | 91.27 (37–340) | 50.36 (32–160) |
| 3b | 5 | 38.00 (23–45) | 3 (60.00) | 2 (40.00) | 1.71 (0.10–6.88) | 52.40 (58–204) | 37.00 (44–141) |
| 4a | 0 | ||||||
| 5a | 1 | 43.00 (43–43) | 2 (100.00) | 0 (0.00) | 0.00 | 0.00 | 0.00 |
| 6a | 1 | 25.00 (25–25) | 1 (100.00) | 0 (0.00) | 0.00 | 0.00 | 0.00 |
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| chi-squared =0.643 |
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| |||
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| .067 | .836 | .113 | .605 | .605 | ||
The low number of patients with 2b, 4a, 5a and 6a did not meet the statistical requirements; therefore, these were excluded for follow-up statistics
Primers for genotype analysis of IL-28B
| Primer | IL-28B | Sequence |
|---|---|---|
| RT-PCR primers | rs12989760 forward: | 5′-GTCGTGCCTGTCGTGTACTGA-3′ |
| rs12989760 reverse: | 5′-AGCGCGGAGTGCAATTCA-3′ | |
| rs8099917 forward: | 5′-CTCCTTTTGTTTTCCTTTCTGTGA-3′ | |
| rs8099917 reverse: | 5′-ACATAAAAAGCCAGCTACCAAACT-3′ | |
| rs12980275 forward: | 5′-ACATGAGGTGCTGAGAGAAGTCAA-3′ | |
| rs12980275 reverse: | 5′-TACCCCGGCAAATATTTAGACAC-3′ | |
| Sequencing primers | rs12989760 | 5′-AGCTCCCCGAAGGCG-3′ |
| rs8099917: | 5′-TCCTTTCTGTGAGCAAT-3′ | |
| rs12980275: | 5′- GAAGTCAAATTCCTAGAAA −3′ |
Fig. 1Distribution of HCV genotype. 86% of the patients with HCV infection were genotype 1 and 2, with 1b accounting for 48.05% and 2a accounting for 38.53%, followed by 1a (5.19%), 3a (4.76%), 3b (2.16%), 2b (0.43%), and 6a (0.43%)
IL-28B gene polymorphism in patients with chronic HCV infection and clinical characteristics of patients with different IL-28B SNPs
| Genotype | SNP | Percent | Age (y) | Sex (No. of Patients, %) | Viral Load (106 IU/mL), range | ALT (U/L), range | AST (U/L), range | |
|---|---|---|---|---|---|---|---|---|
| (%) | Male | Female | ||||||
| IL-28B rs8099917 | TT | 76.47 | 48 (25–64) | 54 (52.9) | 52 (47.1) | 7.98 (0.24–72.46) | 34 (18–179) | 38 (17–203) |
| TG + GG | 23.43 | 47 (22–58) | 21 (55.3) | 16 (44.7) | 9.25 (0.89–59.71) | 36 (28–150) | 40 (24–138) | |
| IL-28B rs12979860 | CC | 76.47 | 49 (22–64) | 57 (52.3) | 52 (47.7) | 10.23 (1.02–68.52) | 35 (21–112) | 32 (19–143) |
| CT + TT | 23.43 | 49 (20–58) | 18 (52.9) | 16 (47.1) | 8.72 (0.48–65.32) | 37 (19–135) | 34 (17–178) | |
| IL-28B rs12980275 | AA | 72.55 | 47 (28–64) | 51 (51.5) | 48 (48.5) | 11.25 (1.37–66.68) | 38 (22–144) | 31 (20–123) |
| AG + GG | 27.45 | 46 (25–59) | 24 (54.5) | 20 (45.5) | 9.67 (0.69–71.26) | 32 (19–179) | 29 (17–112) | |
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| chi-squared = 0.413 |
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| ||||
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| .912 | .648 | .825 | .617 | .346 | |||
Fig. 2a Correlation between HCV genotype distribution and SVR. Sustained viral response (SVR) rates by HCV genotypes 1b and 2a were 52.25% (58/111) and 75.28% (67/89), statistically significant at P < 0.01. Rates of patients with HCV genotype 1b and 2a who did not reach SVR were 70.67 and 29.33%. Relationship between IL-28B genotype and SVR was showed in (b). SVR rates in patients of chronic HCV infection with different IL-28 single-nucleotide polymorphisms (SNP) (rs8099917 TT, rs12979860 CC and rs12980275 AA) were 92.41% (25/27), 92.86% (26/28), and 88.89% (24/27), respectively. In contrast, only 7.41, 7.14 and 11.11% of patients with IL-28B rs8099917 TG + GG, rs12979860 CT + TT, and rs12980275 AG + GG obtained SVR. c showed correlation among IL-28B SNP, HCV genotype and SVR
Characteristics of patients
| Variables | No. of Patients (%of Total) |
|---|---|
| Total number of patients | 231 |
| Age ± standard deviation, y | 46.71 ± 14.34 |
| Male | 113 |
| Female | 118 |
| APRI data | 190 (82.3) |
| FIB-4 data | 190 (82.3) |
FIB-4 index, APRI scores and SVR of patients
| Genotype | No. of Patients (% of Total) | No. of Patients with FIB-4 > 3.25 (% of Total) | No. of Patients with APRI > 2 (% of Total) | Total SVR (%) | No. of Patients with FIB-4 > 3.25 and SVR (%) | No. of Patients with APRI > 2 and SVR (%) |
|---|---|---|---|---|---|---|
| 1b | 90 (81.1) | 32 (16.8) | 19 (10.0) | 58 (64.4) | 19 (31.0) | 11 (30.3) |
| 2a | 76 (85.4) | 21 (11.1) | 12 (6.3)* | 67 (88.1) | 11 (39.4) | 8 (50.2) |
| Other | 24 (77.4) | 7 (3.7) | 8 (4.2) | 13 | ||
| Total | 190 (82.3) | 60 (31.6) | 30 (20.5) | 138 (72.6) |
* P < 0.05