Literature DB >> 28334136

A review of network-based approaches to drug repositioning.

Maryam Lotfi Shahreza1, Nasser Ghadiri1, Sayed Rasoul Mousavi2, Jaleh Varshosaz3, James R Green1.   

Abstract

Experimental drug development is time-consuming, expensive and limited to a relatively small number of targets. However, recent studies show that repositioning of existing drugs can function more efficiently than de novo experimental drug development to minimize costs and risks. Previous studies have proven that network analysis is a versatile platform for this purpose, as the biological networks are used to model interactions between many different biological concepts. The present study is an attempt to review network-based methods in predicting drug targets for drug repositioning. For each method, the preferred type of data set is described, and their advantages and limitations are discussed. For each method, we seek to provide a brief description, as well as an evaluation based on its performance metrics.We conclude that integrating distinct and complementary data should be used because each type of data set reveals a unique aspect of information about an organism. We also suggest that applying a standard set of evaluation metrics and data sets would be essential in this fast-growing research domain.

Mesh:

Year:  2018        PMID: 28334136     DOI: 10.1093/bib/bbx017

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  58 in total

1.  A new computational drug repurposing method using established disease-drug pair knowledge.

Authors:  Nafiseh Saberian; Azam Peyvandipour; Michele Donato; Sahar Ansari; Sorin Draghici
Journal:  Bioinformatics       Date:  2019-10-01       Impact factor: 6.937

2.  Safe-in-Man Broad Spectrum Antiviral Agents.

Authors:  Rouan Yao; Aleksandr Ianevski; Denis Kainov
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

3.  Uncovering New Drug Properties in Target-Based Drug-Drug Similarity Networks.

Authors:  Lucreţia Udrescu; Paul Bogdan; Aimée Chiş; Ioan Ovidiu Sîrbu; Alexandru Topîrceanu; Renata-Maria Văruţ; Mihai Udrescu
Journal:  Pharmaceutics       Date:  2020-09-16       Impact factor: 6.321

4.  The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

Authors:  Damian Szklarczyk; Annika L Gable; Katerina C Nastou; David Lyon; Rebecca Kirsch; Sampo Pyysalo; Nadezhda T Doncheva; Marc Legeay; Tao Fang; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

5.  PDE3A inhibitor anagrelide activates death signaling pathway genes and synergizes with cell death-inducing cytokines to selectively inhibit cancer cell growth.

Authors:  Ran An; Jueyu Liu; Jing He; Fei Wang; Qing Zhang; Qiang Yu
Journal:  Am J Cancer Res       Date:  2019-09-01       Impact factor: 6.166

6.  Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation.

Authors:  Angela Serra; Michele Fratello; Antonio Federico; Ravi Ojha; Riccardo Provenzani; Ervin Tasnadi; Luca Cattelani; Giusy Del Giudice; Pia A S Kinaret; Laura A Saarimäki; Alisa Pavel; Suvi Kuivanen; Vincenzo Cerullo; Olli Vapalahti; Peter Horvath; Antonio Di Lieto; Jari Yli-Kauhaluoma; Giuseppe Balistreri; Dario Greco
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 11.622

Review 7.  Harnessing endophenotypes and network medicine for Alzheimer's drug repurposing.

Authors:  Jiansong Fang; Andrew A Pieper; Ruth Nussinov; Garam Lee; Lynn Bekris; James B Leverenz; Jeffrey Cummings; Feixiong Cheng
Journal:  Med Res Rev       Date:  2020-07-13       Impact factor: 12.944

8.  The arachidonic acid metabolism protein-protein interaction network and its expression pattern in esophageal diseases.

Authors:  Bingli Wu; Chunying Bai; Zepeng Du; Haiying Zou; Jianyi Wu; Wenming Xie; Pixian Zhang; Liyan Xu; Enmin Li
Journal:  Am J Transl Res       Date:  2018-03-15       Impact factor: 4.060

9.  Multimodal network diffusion predicts future disease-gene-chemical associations.

Authors:  Chih-Hsu Lin; Daniel M Konecki; Meng Liu; Stephen J Wilson; Huda Nassar; Angela D Wilkins; David F Gleich; Olivier Lichtarge
Journal:  Bioinformatics       Date:  2019-05-01       Impact factor: 6.937

Review 10.  Systems-level biomarkers identification and drug repositioning in colorectal cancer.

Authors:  Hande Beklen; Esra Yildirim; Medi Kori; Beste Turanli; Kazim Yalcin Arga
Journal:  World J Gastrointest Oncol       Date:  2021-07-15
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