Literature DB >> 28334134

A compilation of Web-based research tools for miRNA analysis.

Vaibhav Shukla, Vinay Koshy Varghese, Shama Prasada Kabekkodu, Sandeep Mallya, Kapaettu Satyamoorthy.   

Abstract

Since the discovery of microRNAs (miRNAs), a class of noncoding RNAs that regulate the gene expression posttranscriptionally in sequence-specific manner, there has been a release of number of tools useful for both basic and advanced applications. This is because of the significance of miRNAs in many pathophysiological conditions including cancer. Numerous bioinformatics tools that have been developed for miRNA analysis have their utility for detection, expression, function, target prediction and many other related features. This review provides a comprehensive assessment of web-based tools for the miRNA analysis that does not require prior knowledge of any computing languages.
© The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  databases; diseases; microRNA; online tools

Mesh:

Substances:

Year:  2017        PMID: 28334134     DOI: 10.1093/bfgp/elw042

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  9 in total

1.  Improved protein expression in HEK293 cells by over-expressing miR-22 and knocking-out its target gene, HIPK1.

Authors:  Sarah Inwood; Laura Abaandou; Michael Betenbaugh; Joseph Shiloach
Journal:  N Biotechnol       Date:  2019-08-16       Impact factor: 5.079

2.  Functional annotation of differentially expressed fetal cardiac microRNA targets: implication for microRNA-based cardiovascular therapeutics.

Authors:  Sharad Saxena; Anubhuti Gupta; Vaibhav Shukla; Vibha Rani
Journal:  3 Biotech       Date:  2018-11-21       Impact factor: 2.406

Review 3.  MicroRNA Targeting.

Authors:  Hossein Ghanbarian; Mehmet Taha Yıldız; Yusuf Tutar
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Methods for Using Small Non-Coding RNAs to Improve Recombinant Protein Expression in Mammalian Cells.

Authors:  Sarah Inwood; Michael J Betenbaugh; Joseph Shiloach
Journal:  Genes (Basel)       Date:  2018-01-09       Impact factor: 4.096

5.  miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal.

Authors:  Liang Chen; Liisa Heikkinen; ChangLiang Wang; Yang Yang; K Emily Knott; Garry Wong
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

Review 6.  Evaluation and application of tools for the identification of known microRNAs in plants.

Authors:  Qinglian Li; Guanqing Liu; Yu Bao; Yuechao Wu; Qi You
Journal:  Appl Plant Sci       Date:  2021-04-07       Impact factor: 1.936

7.  Hybrid Deep Neural Network for Handling Data Imbalance in Precursor MicroRNA.

Authors:  Elakkiya R; Deepak Kumar Jain; Ketan Kotecha; Sharnil Pandya; Sai Siddhartha Reddy; Rajalakshmi E; Vijayakumar Varadarajan; Aniket Mahanti; Subramaniyaswamy V
Journal:  Front Public Health       Date:  2021-12-23

Review 8.  Bioinformatic Tools for the Identification of MicroRNAs Regulating the Transcription Factors in Patients with β-Thalassemia.

Authors:  Sumayakausar S Kalaigar; Rajalaksmi Birur Rajashekar; Suma M Nataraj; Prashant Vishwanath; Akila Prashant
Journal:  Bioinform Biol Insights       Date:  2022-08-03

9.  In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle.

Authors:  Quratulain Hanif; Muhammad Farooq; Imran Amin; Shahid Mansoor; Yi Zhang; Qaiser Mahmood Khan
Journal:  PLoS One       Date:  2018-10-26       Impact factor: 3.240

  9 in total

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