| Literature DB >> 28330252 |
Shikha Thakur1, Nirmal Kant Sharma1, Neerja Thakur1, Tek Chand Bhalla2.
Abstract
Proteases are a class of enzymes that catalyze hydrolysis of peptide bonds of proteins. In this study, 221 proteolytic bacterial isolates were obtained by enrichment culture method from soils of various regions of Himachal Pradesh, India. From these a hyper producer of protease was screened and identified by morphological and physiological testing and by 16S rDNA sequence as Serratia marcescens PPB-26. Statistical optimization of physiochemical parameters enhanced the protease production by 75 %. Protease of S. marcescens PPB-26 was classified as a metalloprotease. It showed optimal activity at 30 °C, pH 7.5 (0.15 M Tris-HCl buffer) and with 0.8 % substrate concentration. It had K m = 0.3 %, V max = 34.5 μmol min-1 mg-1 protein and a half life of 2 days at 30 °C. The enzyme was stable in most metal ions but showed increased activity with Fe2+ and Cu2+ while strong inhibition with Co2+ and Zn2+. Further investigation showed that the enzyme could not only retain its activity in various organic solvents but also showed increased activity with methanol and ethanol. The reported metalloprotease is thus a potential candidate for carrying out industrial peptide synthesis.Entities:
Keywords: 16S rDNA sequencing; Metalloprotease; Organic solvent tolerant protease; Response surface methodology; Serratia marcescens
Year: 2016 PMID: 28330252 PMCID: PMC4999571 DOI: 10.1007/s13205-016-0500-0
Source DB: PubMed Journal: 3 Biotech ISSN: 2190-5738 Impact factor: 2.406
Fig. 1Phylogenetic dendrogram based on the 16S rDNA gene sequences
Different media used for protease production by S. marcescens PPB-26
| Medium code | Specific activity (U/mg of protein) | References |
|---|---|---|
| M1 | 8.1 | GYP medium |
|
| 9 | GYC medium |
| M3 | 5 | Sinha and Satyanarayana ( |
| M4 | 0.3 | Chu et al. ( |
| M5 | 5.6 | Nutrient casein broth |
| M6 | 3 | Tsuchiya et al. ( |
| M7 | 8.1 | Tsujibo et al. ( |
| M8 | 8.7 | Matta et al. ( |
| M9 | 8.6 | Purva et al. ( |
| M10 | 8.7 | Tsuchida et al. ( |
| M11 | 8.5 | Kobayashi et al. ( |
| M12 | 8.1 | Minimal medium |
Plackett-Burman experimental design for production of proteolytic activity
| Run | pH | Temperature (°C) | Dextrose (%) | Tryptone (%) | Casein (%) | Yeast Ext. (%) | ZnSO4 (%) | KH2PO4 (%) | CaCl2 (%) | MgSO4 (%) | NaCl (%) | Response (U/mg protein) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.0 | 20 | 5.0 | 2.0 | 0 | 1.0 | 0.01 | 0.5 | 0 | 0 | 0 | 9.0 |
| 2 | 9.0 | 40 | 0.5 | 2.0 | 2.0 | 1.0 | 0 | 0 | 0 | 0.1 | 0 | 0 |
| 3 | 5.0 | 20 | 5.0 | 0.1 | 2.0 | 1.0 | 0 | 0.5 | 0.1 | 0.1 | 0 | 9.8 |
| 4 | 9.0 | 40 | 5.0 | 0.1 | 0 | 0.1 | 0.01 | 0 | 0.1 | 0.1 | 0 | 0 |
| 5 | 9.0 | 40 | 0.5 | 0.1 | 0 | 1.0 | 0 | 0.5 | 0.1 | 0 | 1.0 | 0 |
| 6 | 5.0 | 40 | 5.0 | 0.1 | 2.0 | 1.0 | 0.01 | 0 | 0 | 0 | 1.0 | 1.0 |
| 7 | 5.0 | 40 | 5.0 | 2.0 | 0 | 0.1 | 0 | 0.5 | 0 | 0.1 | 1.0 | 0 |
| 8 | 9.0 | 20 | 0.5 | 0.1 | 2.0 | 0.1 | 0.01 | 0.5 | 0 | 0.1 | 1.0 | 2.6 |
| 9 | 5.0 | 20 | 0.5 | 0.1 | 0 | 0.1 | 0 | 0 | 0 | 0 | 0 | 0 |
| 10 | 9.0 | 20 | 5.0 | 2.0 | 2.0 | 0.1 | 0 | 0 | 0.1 | 0 | 1.0 | 1.163 |
| 11 | 5.0 | 40 | 0.5 | 2.0 | 2.0 | 0.1 | 0.01 | 0.5 | 0.1 | 0 | 0 | 0.0078 |
| 12 | 5.0 | 20 | 0.5 | 2.0 | 0 | 1.0 | 0.01 | 0 | 0.1 | 0.1 | 1.0 | 7.0 |
Fig. 2a Pareto chart showing positive and negative factors for protease production by S. marcescens PPB-26. b Three dimensional response surface plot for the effect of (A) CaCl2 and (B) Yeast extract on protease production by S. marcescens PPB-26. c Three dimensional graph showing effect of two variable interaction (A) KH2PO4 and (C) CaCl2 on protease production. d Three dimensional (3D) graph showing effect of two variable interaction effect (B) KH2PO4 and (C) Yeast extract on protease production. e Perturbation plot showing the optimum value for optimized variables
Central composite experimental design
| Run | Yeast Extract (%) | CaCl2 (%) | KH2PO4 (%) | Response (U/mg protein) |
|---|---|---|---|---|
| 1 | 1.0 | 0.25 | 0.5 | 4.9 |
| 2 | 0 | 0.25 | 0.5 | 3.0 |
| 3 | 0.02 | 0 | 0.5 | 0 |
| 4 | 2.67 | 0.25 | 1.0 | 5.3 |
| 5 | 1.0 | 0.25 | 0.5 | 16 |
| 6 | 1.0 | 0.25 | 0.5 | 15 |
| 7 | 0.02 | 0.5 | 1.0 | 4.0 |
| 8 | 2.0 | 0.5 | 1.0 | 17 |
| 9 | 1.0 | 0.25 | 0 | 3.0 |
| 10 | 1.0 | 0.25 | 1.34 | 10 |
| 11 | 1.0 | 0 | 0.5 | 0.5 |
| 12 | 1.0 | 0.25 | 0.5 | 16.5 |
| 13 | 0.2 | 0 | 0 | 0 |
| 14 | 1.0 | 0.25 | 0.5 | 17 |
| 15 | 1.0 | 0.67 | 0.5 | 12 |
| 16 | 2.0 | 0 | 1.0 | 1.0 |
| 17 | 2.0 | 0 | 0 | 0.8 |
| 18 | 0.02 | 0.5 | 0 | 1 |
| 19 | 1.0 | 0.25 | 0.5 | 17.6 |
| 20 | 2.0 | 0.5 | 0 | 9 |
Fig. 3Lineweaver-Burk plot for the protease of S. marcescens PPB-26
Fig. 4Effect of organic solvents on protease activity of S. marcescens PPB-26