Literature DB >> 28328896

Microbiota and reproducibility of rodent models.

Craig L Franklin1, Aaron C Ericsson1.   

Abstract

The gut microbiota (GM) plays a critical role in human health and disease. Likewise, it is becoming increasingly evident that changes or disruptions to the GM can have significant effects on animal models and their expressed phenotypes, adding a complex and important variable into basic research and preclinical studies. In this article, we review some of the most common sources of GM variability in rodent models, and discuss measures to address this variability for improved reproducibility.

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Year:  2017        PMID: 28328896      PMCID: PMC5762113          DOI: 10.1038/laban.1222

Source DB:  PubMed          Journal:  Lab Anim (NY)        ISSN: 0093-7355            Impact factor:   12.625


  107 in total

1.  Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system.

Authors:  Wendy S Garrett; Graham M Lord; Shivesh Punit; Geanncarlo Lugo-Villarino; Sarkis K Mazmanian; Susumu Ito; Jonathan N Glickman; Laurie H Glimcher
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

Review 2.  Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour.

Authors:  John F Cryan; Timothy G Dinan
Journal:  Nat Rev Neurosci       Date:  2012-09-12       Impact factor: 34.870

3.  Functional specializations of intestinal dendritic cell and macrophage subsets that control Th17 and regulatory T cell responses are dependent on the T cell/APC ratio, source of mouse strain, and regional localization.

Authors:  Timothy L Denning; Brian A Norris; Oscar Medina-Contreras; Santhakumar Manicassamy; Duke Geem; Rajat Madan; Christopher L Karp; Bali Pulendran
Journal:  J Immunol       Date:  2011-06-10       Impact factor: 5.422

4.  Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Authors:  Maria G Dominguez-Bello; Elizabeth K Costello; Monica Contreras; Magda Magris; Glida Hidalgo; Noah Fierer; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

5.  The gut microbiota as an environmental factor that regulates fat storage.

Authors:  Fredrik Bäckhed; Hao Ding; Ting Wang; Lora V Hooper; Gou Young Koh; Andras Nagy; Clay F Semenkovich; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-25       Impact factor: 11.205

6.  Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome.

Authors:  Peter J Turnbaugh; Fredrik Bäckhed; Lucinda Fulton; Jeffrey I Gordon
Journal:  Cell Host Microbe       Date:  2008-04-17       Impact factor: 21.023

7.  Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses.

Authors:  Siobhain M O'Mahony; Julian R Marchesi; Paul Scully; Caroline Codling; Anne-Marie Ceolho; Eamonn M M Quigley; John F Cryan; Timothy G Dinan
Journal:  Biol Psychiatry       Date:  2008-08-23       Impact factor: 13.382

8.  Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation.

Authors:  Dionysios A Antonopoulos; Susan M Huse; Hilary G Morrison; Thomas M Schmidt; Mitchell L Sogin; Vincent B Young
Journal:  Infect Immun       Date:  2009-03-23       Impact factor: 3.441

9.  Chlorinated Water Modulates the Development of Colorectal Tumors with Chromosomal Instability and Gut Microbiota in Apc-Deficient Mice.

Authors:  Tatsunari Sasada; Takao Hinoi; Yasufumi Saito; Tomohiro Adachi; Yuji Takakura; Yasuo Kawaguchi; Yusuke Sotomaru; Kazuhiro Sentani; Naohide Oue; Wataru Yasui; Hideki Ohdan
Journal:  PLoS One       Date:  2015-07-17       Impact factor: 3.240

10.  An enteric virus can replace the beneficial function of commensal bacteria.

Authors:  Elisabeth Kernbauer; Yi Ding; Ken Cadwell
Journal:  Nature       Date:  2014-11-19       Impact factor: 49.962

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  79 in total

Review 1.  Effects of Rodent Thermoregulation on Animal Models in the Research Environment.

Authors:  F Claire Hankenson; James O Marx; Christopher J Gordon; John M David
Journal:  Comp Med       Date:  2018-11-20       Impact factor: 0.982

2.  C57BL/6 substrain differences in formalin-induced pain-like behavioral responses.

Authors:  Esad Ulker; Martial Caillaud; Trusha Patel; Alyssa White; Danyal Rashid; Mashael Alqasem; Aron H Lichtman; Camron D Bryant; M Imad Damaj
Journal:  Behav Brain Res       Date:  2020-05-16       Impact factor: 3.332

3.  Complex Microbiota in Laboratory Rodents: Management Considerations.

Authors:  Craig L Franklin; Aaron C Ericsson
Journal:  ILAR J       Date:  2020-10-19

4.  Dynamic and Asymmetric Changes of the Microbial Communities after Cohousing in Laboratory Mice.

Authors:  Roberta Caruso; Masashi Ono; Marie E Bunker; Gabriel Núñez; Naohiro Inohara
Journal:  Cell Rep       Date:  2019-06-11       Impact factor: 9.423

5.  Immune responses to the real world.

Authors:  Caroline J Zeiss; Cory F Brayton
Journal:  Lab Anim (NY)       Date:  2017-12-29       Impact factor: 12.625

6.  Effects of Intraoperative Vagal Nerve Stimulation on the Gastrointestinal Microbiome in a Mouse Model of Amyotrophic Lateral Sclerosis.

Authors:  Megan M Haney; Aaron C Ericsson; Teresa E Lever
Journal:  Comp Med       Date:  2018-11-13       Impact factor: 0.982

7.  The mRNA-binding protein IGF2BP1 maintains intestinal barrier function by up-regulating occludin expression.

Authors:  Vikash Singh; Chethana P Gowda; Vishal Singh; Ashwinkumar S Ganapathy; Dipti M Karamchandani; Melanie A Eshelman; Gregory S Yochum; Prashant Nighot; Vladimir S Spiegelman
Journal:  J Biol Chem       Date:  2020-05-08       Impact factor: 5.157

Review 8.  Gutted! Unraveling the Role of the Microbiome in Major Depressive Disorder.

Authors:  Thomaz F S Bastiaanssen; Sofia Cussotto; Marcus J Claesson; Gerard Clarke; Timothy G Dinan; John F Cryan
Journal:  Harv Rev Psychiatry       Date:  2020 Jan/Feb       Impact factor: 3.732

9.  A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.

Authors:  Christopher Whidbey; Natalie C Sadler; Reji N Nair; Regan F Volk; Adrian J DeLeon; Lisa M Bramer; Sarah J Fansler; Joshua R Hansen; Anil K Shukla; Janet K Jansson; Brian D Thrall; Aaron T Wright
Journal:  J Am Chem Soc       Date:  2018-12-17       Impact factor: 15.419

10.  Modification of Fecal Bacteria Counts and Blood Immune Cells in the Offspring of BALB/c and C57BL/6 Mice Obtained through Interstrain Mouse Embryo Transfer.

Authors:  Ekaterina A Litvinova; Galina V Kontsevaya; Elena N Kozhevnikova; Kseniya M Achasova; Ludmila A Gerlinskaya; Natalya A Feofanova; Mikhail P Moshkin
Journal:  J Am Assoc Lab Anim Sci       Date:  2020-06-09       Impact factor: 1.232

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