Literature DB >> 28325812

TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network.

Matej Usaj1, Yizhao Tan1, Wen Wang2, Benjamin VanderSluis2,3,4, Albert Zou1, Chad L Myers5, Michael Costanzo6, Brenda Andrews6,7, Charles Boone6,7.   

Abstract

Providing access to quantitative genomic data is key to ensure large-scale data validation and promote new discoveries. TheCellMap.org serves as a central repository for storing and analyzing quantitative genetic interaction data produced by genome-scale Synthetic Genetic Array (SGA) experiments with the budding yeast Saccharomyces cerevisiae In particular, TheCellMap.org allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize subnetworks, using data-driven network layouts in an intuitive and interactive manner.
Copyright © 2017 Usaj et al.

Entities:  

Keywords:  genetic interactions; genetic network; synthetic genetic array SGA; yeast genetics

Mesh：

Substances：

Year:  2017        PMID： 28325812      PMCID： PMC5427489          DOI： 10.1534/g3.117.040220

Source DB:  PubMed          Journal:  G3 (Bethesda)        ISSN： 2160-1836            Impact factor:   3.154


  23 in total

Review 1.  Principles for the buffering of genetic variation.

Authors:  J L Hartman; B Garvik; L Hartwell
Journal:  Science       Date:  2001-02-09       Impact factor: 47.728

2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

Review 3.  Formins: signaling effectors for assembly and polarization of actin filaments.

Authors:  Marie Evangelista; Sally Zigmond; Charles Boone
Journal:  J Cell Sci       Date:  2003-07-01       Impact factor: 5.285

4.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  The mystery of missing heritability: Genetic interactions create phantom heritability.

Authors:  Or Zuk; Eliana Hechter; Shamil R Sunyaev; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-05       Impact factor: 11.205

6.  Systematic genetic analysis with ordered arrays of yeast deletion mutants.

Authors:  A H Tong; M Evangelista; A B Parsons; H Xu; G D Bader; N Pagé; M Robinson; S Raghibizadeh; C W Hogue; H Bussey; B Andrews; M Tyers; C Boone
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

7.  The genetic landscape of a cell.

Authors:  Michael Costanzo; Anastasia Baryshnikova; Jeremy Bellay; Yungil Kim; Eric D Spear; Carolyn S Sevier; Huiming Ding; Judice L Y Koh; Kiana Toufighi; Sara Mostafavi; Jeany Prinz; Robert P St Onge; Benjamin VanderSluis; Taras Makhnevych; Franco J Vizeacoumar; Solmaz Alizadeh; Sondra Bahr; Renee L Brost; Yiqun Chen; Murat Cokol; Raamesh Deshpande; Zhijian Li; Zhen-Yuan Lin; Wendy Liang; Michaela Marback; Jadine Paw; Bryan-Joseph San Luis; Ermira Shuteriqi; Amy Hin Yan Tong; Nydia van Dyk; Iain M Wallace; Joseph A Whitney; Matthew T Weirauch; Guoqing Zhong; Hongwei Zhu; Walid A Houry; Michael Brudno; Sasan Ragibizadeh; Balázs Papp; Csaba Pál; Frederick P Roth; Guri Giaever; Corey Nislow; Olga G Troyanskaya; Howard Bussey; Gary D Bader; Anne-Claude Gingras; Quaid D Morris; Philip M Kim; Chris A Kaiser; Chad L Myers; Brenda J Andrews; Charles Boone
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

8.  Phenotypic analysis of temperature-sensitive yeast actin mutants.

Authors:  P Novick; D Botstein
Journal:  Cell       Date:  1985-02       Impact factor: 41.582

9.  CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae.

Authors:  Judice L Y Koh; Yolanda T Chong; Helena Friesen; Alan Moses; Charles Boone; Brenda J Andrews; Jason Moffat
Journal:  G3 (Bethesda)       Date:  2015-04-15       Impact factor: 3.154

10.  Finding the sources of missing heritability in a yeast cross.

Authors:  Joshua S Bloom; Ian M Ehrenreich; Wesley T Loo; Thúy-Lan Võ Lite; Leonid Kruglyak
Journal:  Nature       Date:  2013-02-03       Impact factor: 49.962
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  49 in total

1.  Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability.

Authors:  Eric E Bryant; Ivana Šunjevarić; Luke Berchowitz; Rodney Rothstein; Robert J D Reid
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

2.  Ivy1 is a negative regulator of Gtr-dependent TORC1 activation.

Authors:  Natalia V Varlakhanova; Bryan A Tornabene; Marijn G J Ford
Journal:  J Cell Sci       Date:  2018-09-07       Impact factor: 5.285

3.  A Prion Epigenetic Switch Establishes an Active Chromatin State.

Authors:  Zachary H Harvey; Anupam K Chakravarty; Raymond A Futia; Daniel F Jarosz
Journal:  Cell       Date:  2020-02-27       Impact factor: 41.582

4.  Proteasome Activity Is Influenced by the HECT_2 Protein Ipa1 in Budding Yeast.

Authors:  Anne P Lutz; Sarah Schladebeck; Christian Renicke; Roberta Spadaccini; Hans-Ulrich Mösch; Christof Taxis
Journal:  Genetics       Date:  2018-03-08       Impact factor: 4.562

5.  A Simple PCR-based Strategy for the Introduction of Point Mutations in the Yeast Saccharomyces cerevisiae via CRISPR/Cas9.

Authors:  Guohui Hu; Shiwen Luo; Hai Rao; Haili Cheng; Xin Gan
Journal:  Biochem Mol Biol J       Date:  2018-03-07

6.  The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.

Authors:  Axelle Marchant; Angel F Cisneros; Alexandre K Dubé; Isabelle Gagnon-Arsenault; Diana Ascencio; Honey Jain; Simon Aubé; Chris Eberlein; Daniel Evans-Yamamoto; Nozomu Yachie; Christian R Landry
Journal:  Elife       Date:  2019-08-27       Impact factor: 8.140

7.  Synthetic Physical Interactions with the Yeast Centrosome.

Authors:  Rowan S M Howell; Attila Csikász-Nagy; Peter H Thorpe
Journal:  G3 (Bethesda)       Date:  2019-07-09       Impact factor: 3.154

8.  Systematic analysis of complex genetic interactions.

Authors:  Elena Kuzmin; Benjamin VanderSluis; Wen Wang; Guihong Tan; Raamesh Deshpande; Yiqun Chen; Matej Usaj; Attila Balint; Mojca Mattiazzi Usaj; Jolanda van Leeuwen; Elizabeth N Koch; Carles Pons; Andrius J Dagilis; Michael Pryszlak; Jason Zi Yang Wang; Julia Hanchard; Margot Riggi; Kaicong Xu; Hamed Heydari; Bryan-Joseph San Luis; Ermira Shuteriqi; Hongwei Zhu; Nydia Van Dyk; Sara Sharifpoor; Michael Costanzo; Robbie Loewith; Amy Caudy; Daniel Bolnick; Grant W Brown; Brenda J Andrews; Charles Boone; Chad L Myers
Journal:  Science       Date:  2018-04-20       Impact factor: 47.728

9.  Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.

Authors:  Kristin L Patrick; Jason A Wojcechowskyj; Samantha L Bell; Morgan N Riba; Tao Jing; Sara Talmage; Pengbiao Xu; Ana L Cabello; Jiewei Xu; Michael Shales; David Jimenez-Morales; Thomas A Ficht; Paul de Figueiredo; James E Samuel; Pingwei Li; Nevan J Krogan; Robert O Watson
Journal:  Cell Syst       Date:  2018-08-01       Impact factor: 10.304

10.  Cellular responses to proteostasis perturbations reveal non-optimal feedback in chaperone networks.

Authors:  Asmita Ghosh; Abhilash Gangadharan; Monika Verma; Sarada Das; Latika Matai; Devi Prasanna Dash; Debasis Dash; Koyeli Mapa; Kausik Chakraborty
Journal:  Cell Mol Life Sci       Date:  2019-01-25       Impact factor: 9.261
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