| Literature DB >> 28324388 |
Nayera A M Abdelwahed1, Eman Fadl Ahmed2, Eman W El-Gammal2, Usama W Hawas3.
Abstract
Marine endophytic fungi isolated from Red Sea organisms were screened for the production of dextranase enzyme. The most potent isolate was from the Red Sea sponge Callyspongia spp. and was selected for identification. The18S rRNA amplification for phylogenetic study revealed that the isolate was highly related to Aspergillus flocculosus strain NRRL 5224 by 99 %. Medium composition and culture conditions for dextranase production were optimized by response surface methodology. A significant influence of dextran, yeast extract, K2HPO4, NaNO3, NaCl, MgSO4.7H2O and culture requirements such as incubation time, inoculum size, medium volume and inoculum age on dextranase production was evaluated by Plackett-Burman design. The most significant factors were further optimized using Box-Behnken design. The model predicted a dextranase activity of 438.15 U/ml when dextran concentration, medium volume and incubation time were 2.1 g/l, 52.47/250 ml flask and 80.48 h, respectively. Verification of the model showed that dextranase production of 440 U/ml was observed under the optimal condition confirming the validity of the model.Entities:
Keywords: Dextranase; Fungi; Optimization; Response surface methodology
Year: 2013 PMID: 28324388 PMCID: PMC4162893 DOI: 10.1007/s13205-013-0187-4
Source DB: PubMed Journal: 3 Biotech ISSN: 2190-5738 Impact factor: 2.406
Experimental definition for the Plackett–Burman design
| Symbol code | Factors | Experimental values | |
|---|---|---|---|
| Low level (−1) | High level (+1) | ||
| Dextran | 0.5 | 1.5 | |
| Yeast extract | 1 | 2 | |
| K2HPO4 | 0.5 | 1 | |
| NaNO3 | 1 | 2 | |
| NaCl | 0.5 | 1 | |
| MgSO4·7H2O | 0.5 | 1 | |
| Incubation time | 5 | 7 | |
| Inoculum size | 1 | 2 | |
| Medium volume | 25 | 50 | |
| Inoculum age | 48 | 72 | |
Two-level factorial design of variables (in coded levels) with titer as response values
| Run |
|
|
|
|
|
|
|
|
|
| Dextranase activity (U/ml) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | −1 | 1 | 1 | 1 | −1 | 1 | −1 | −1 | −1 | 358.5 |
| 2 | 1 | −1 | −1 | 1 | 1 | 1 | −1 | 1 | 1 | −1 | 327.0 |
| 3 | −1 | −1 | −1 | −1 | 1 | 1 | 1 | −1 | 1 | 1 | 351.0 |
| 4 | 1 | 1 | 1 | −1 | −1 | 1 | 1 | 1 | −1 | −1 | 321.9 |
| 5 | 1 | −1 | 1 | −1 | −1 | −1 | −1 | 1 | 1 | 1 | 420.6 |
| 6 | 1 | 1 | −1 | 1 | −1 | −1 | −1 | −1 | 1 | 1 | 499.5 |
| 7 | −1 | 1 | 1 | −1 | 1 | −1 | 1 | 1 | 1 | −1 | 265.2 |
| 8 | −1 | −1 | 1 | 1 | −1 | 1 | 1 | 1 | −1 | 1 | 274.8 |
| 9 | −1 | 1 | −1 | 1 | 1 | −1 | −1 | 1 | −1 | 1 | 212.1 |
| 10 | 1 | 1 | 1 | −1 | 1 | 1 | −1 | −1 | −1 | 1 | 333.9 |
| 11 | −1 | 1 | 1 | 1 | −1 | 1 | −1 | −1 | 1 | −1 | 349.5 |
| 12 | −1 | −1 | −1 | −1 | −1 | −1 | −1 | −1 | −1 | −1 | 321.9 |
Variables coded are same as given in Table 1
Coded and actual values of the culture conditions tested in Box–Behnken design
| Symbol code | Factors | Actual levels of coded factors | ||
|---|---|---|---|---|
| +1 | 0 | −1 | ||
| Dextran | 2.5 | 2.0 | 1.5 | |
| Medium volume | 65 | 50 | 25 | |
| Inoculum age | 96 | 72 | 48 | |
Box–Behnken of three variables in coded along with titer as response values
| Run |
|
|
| Dextranase activity (U/ml) |
|---|---|---|---|---|
| 1 | −1 | −1 | 0 | 326.70 |
| 2 | 1 | −1 | 0 | 348.06 |
| 3 | −1 | 1 | 0 | 357.70 |
| 4 | 1 | 1 | 0 | 414.90 |
| 5 | −1 | 0 | −1 | 271.80 |
| 6 | 1 | 0 | −1 | 362.40 |
| 7 | −1 | 0 | 1 | 393.60 |
| 8 | 1 | 0 | 1 | 398.40 |
| 9 | 0 | −1 | −1 | 257.70 |
| 10 | 0 | 1 | −1 | 403.20 |
| 11 | 0 | −1 | 1 | 395.66 |
| 12 | 0 | 1 | 1 | 403.20 |
| 13 | 0 | 0 | 0 | 429.00 |
| 14 | 0 | 0 | 0 | 429.00 |
| 15 | 0 | 0 | 0 | 429.00 |
Distribution of the first ten blast hits on the query sequence
| Organisms description | GenBank accession | Identities | ||
|---|---|---|---|---|
| Match | Total | Pct. (%) | ||
| EU021616.1 | 587 | 589 | 99 | |
| HQ649845.1 | 582 | 587 | 99 | |
| FJ797698.1 | 583 | 589 | 99 | |
| EF661432.1 | 575 | 577 | 99 | |
| EF661431.1 | 575 | 577 | 99 | |
| EF661429.1 | 575 | 577 | 99 | |
| FJ214372.1 | 581 | 588 | 99 | |
| HQ649847.1 | 576 | 581 | 99 | |
| FJ571434.1 | 567 | 568 | 99 | |
| JN851013.1 | 563 | 568 | 99 | |
Estimated regression coefficients for dextranase enzyme production
| Code | Variable | Effect | ||||
|---|---|---|---|---|---|---|
|
| Dextran (g/l) | 162.3 | 55.97 | 3,132.14 | 81.1500 | 0.011* |
|
| Yeast extract (g/l) | −23.9 | −8.24 | 67.92 | −11.9500 | 0.077 |
|
| K2HPO4 (g/l) | −10.300 | −3.55 | 12.61 | −10.3 | 0.175 |
|
| NaNO3 (g/l) | 2.3 | 0.79 | 0.63 | 1.15000 | 0.573 |
|
| NaCl (g/l) | −227.0 | −39.14 | 1,531.78 | −113.500 | 0.016* |
|
| MgSO4·7H2O (g/l) | −79.8 | −13.76 | 189.30 | −39.9 | 0.046 |
|
| Incubation time (days) | 17.6 | 12.17 | 148.17 | 8.82500 | 0.052 |
|
| Inoculum size (ml) | −130.9 | −45.14 | 2,037.43 | −65.4500 | 0.014* |
|
| Medium volume (ml/250 mlflask) | 5.2 | 44.79 | 2,006.42 | 2.59800 | 0.014* |
|
| Inoculum age (h) | 2.1 | 17.00 | 289.00 | 1.02708 | 0.037* |
* Identifies variables with a significant effect on the response (p value <0.05)
Analysis of variance (ANOVA) for the quadratic model
| Source |
| SS | MS |
|
|
|---|---|---|---|---|---|
| Regression | 10 | 59,387.7 | 5,938.8 | 941.54 | 0.025 |
| Residual error | 1 | 6.3 | 6.3 |
R2 = 99.99 %, R2 (pred) = 98.47 %, R2 (adj) = 99.88 %
SS sum of squares, df degrees of freedom, MS mean square
Fig. 1Figure shows the main effect plots for the system, which show how each factor affects the response characteristic
Fig. 2Pareto chart of standardized effects on the dextranase enzyme production. The above results indicated that the Plackett–Burman design is a powerful tool for identifying factors, which had significant influence on dextranase activity. The exact optimal values of the most significant factors (dextran, medium volume and inoculum age) can be determined by the subsequent Box–Behnken experiment. Optimization of significant culture parameters with RSM based on the Box–Behnken design. The culture variables found to significantly affect dextranase enzyme production were tested at values given in Table 6 for the Box–Behnken design to optimize the magnitude of those variables
Estimated regression coefficients of Box–Behnken design for dextranase enzyme production
| Term | Coefficients | SE coefficients | |||
|---|---|---|---|---|---|
| Constant | −1,282.69 | 161.252 | −7.955 | 0.001* | |
| Dextran |
| 732.90 | 112.166 | 6.534 | 0.001* |
| Medium volume |
| 9.83 | 2.143 | 4.586 | 0.006* |
| Inoculum age |
| 17.03 | 1.987 | 8.572 | 0.000* |
| Dextran × dextran | −151.10 | 25.430 | −5.942 | 0.002* | |
| Medium volume × medium volume | −0.06 | 0.017 | −3.341 | 0.021 | |
| Inoculum age × inoculum age | −0.06 | 0.011 | −5.454 | 0.003* | |
| Dextran × medium volume | 0.92 | 0.601 | 1.529 | 0.187 | |
| Dextran × inoculum age | −1.79 | 0.509 | −3.512 | 0.017* | |
| Medium volume × inoculum age | −0.07 | 0.013 | −5.460 | 0.003* | |
R2 = 98.19 %, R2 (pred) = 68.97 %, R2 (adj) = 94.93 %
SE standard error, t Student’s test, p corresponding level of significance
* Significant
ANOVA for response surface quadratic model
| Source | Degrees of freedom | Sum of square | Adjusted sum of square | Mean of square | ||
|---|---|---|---|---|---|---|
| Regression | 9 | 40,429.4 | 40,429.4 | 4,492.2 | 30.10 | 0.001 |
| Linear | 3 | 23,800.7 | 15,210.1 | 5,070.0 | 33.97 | 0.001 |
| Square | 3 | 9,989.6 | 9,989.6 | 3,329.9 | 22.31 | 0.003 |
| Interaction | 3 | 6,639.1 | 6,639.1 | 2,213.0 | 14.83 | 0.006 |
| Residual error | 5 | 746.2 | 746.2 | 149.2 | ||
| Lack-of-fit | 3 | 746.2 | 746.2 | 248.7 | ||
| Pure error | 2 | 0.0 | 0.0 | 0.0 | ||
| Total | 14 | 41,175.6 |
R2 = 98.87 %, R2 (pred) = 81.91 %, R2(adj) = 96.83 %
F Fishers’s function, p corresponding level of significance
Fig. 3a Response surface and b contour plots for the interaction of dextran concentration and medium volume at inoculum age 72 h on dextranase enzyme activity. The values in the figure indicated the level of dextranase enzyme activity (U/ml)
Fig. 4a Response surface and b contour plots for the interaction of dextran concentration and inoculum age at medium volume 50/250 ml flask on dextranase enzyme activity. The values in the figure indicated the level of dextranase enzyme activity (U/ml)
Fig. 5a Response surface and b contour plots for the interaction of medium volume (ml/250 ml flask) and inoculum age (h) at dextran concentration 2 g/l on dextranase enzyme activity. The values in the figure indicated the level of dextranase enzyme activity (U/ml)
Fig. 6Recommended input variables to achieve optimal response