Literature DB >> 28320905

Insights into the deactivation of 5-bromouracil after ultraviolet excitation.

Francesca Peccati1, Sebastian Mai2, Leticia González3.   

Abstract

5-Bromouracil is a nucleobase analogue that can replace thymine in DNA strands and acts as a strong radiosensitizer, with potential applications in molecular biology and cancer therapy. Here, the deactivation of 5-bromouracil after ultraviolet irradiation is investigated in the singlet and triplet manifold by accurate quantum chemistry calculations and non-adiabatic dynamics simulations. It is found that, after irradiation to the bright ππ* state, three main relaxation pathways are, in principle, possible: relaxation back to the ground state, intersystem crossing (ISC) and C-Br photodissociation. Based on accurate MS-CASPT2 optimizations, we propose that ground-state relaxation should be the predominant deactivation pathway in the gas phase. We then employ different electronic structure methods to assess their suitability to carry out excited-state dynamics simulations. MRCIS (multi-reference configuration interaction including single excitations) was used in surface hopping simulations to compute the ultrafast ISC dynamics, which mostly involves the 1nOπ* and 3ππ* states.This article is part of the themed issue 'Theoretical and computational studies of non-equilibrium and non-statistical dynamics in the gas phase, in the condensed phase and at interfaces'.
© 2017 The Author(s).

Entities:  

Keywords:  excited states; non-adiabatic dynamics; nucleobase analogues

Mesh:

Substances:

Year:  2017        PMID: 28320905      PMCID: PMC5360901          DOI: 10.1098/rsta.2016.0202

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  33 in total

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Journal:  Nature       Date:  1954-08-14       Impact factor: 49.962

2.  Army ants algorithm for rare event sampling of delocalized nonadiabatic transitions by trajectory surface hopping and the estimation of sampling errors by the bootstrap method.

Authors:  Shikha Nangia; Ahren W Jasper; Thomas F Miller; Donald G Truhlar
Journal:  J Chem Phys       Date:  2004-02-22       Impact factor: 3.488

3.  INDUCTION OF SPECIFIC MUTATIONS WITH 5-BROMOURACIL.

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Journal:  Proc Natl Acad Sci U S A       Date:  1958-02       Impact factor: 11.205

4.  Critical appraisal of the fewest switches algorithm for surface hopping.

Authors:  Giovanni Granucci; Maurizio Persico
Journal:  J Chem Phys       Date:  2007-04-07       Impact factor: 3.488

5.  Ab initio molecular dynamics and time-resolved photoelectron spectroscopy of electronically excited uracil and thymine.

Authors:  Hanneli R Hudock; Benjamin G Levine; Alexis L Thompson; Helmut Satzger; D Townsend; N Gador; S Ullrich; Albert Stolow; Todd J Martínez
Journal:  J Phys Chem A       Date:  2007-08-09       Impact factor: 2.781

6.  On the intrinsic population of the lowest triplet state of thymine.

Authors:  Juan José Serrano-Pérez; Remedios Gonzalez-Luque; Manuela Merchan; Luis Serrano-Andrés
Journal:  J Phys Chem B       Date:  2007-10-18       Impact factor: 2.991

7.  A phase 3 randomized study of radiotherapy plus procarbazine, CCNU, and vincristine (PCV) with or without BUdR for the treatment of anaplastic astrocytoma: a preliminary report of RTOG 9404.

Authors:  M D Prados; C Scott; H Sandler; J C Buckner; T Phillips; C Schultz; R Urtasun; R Davis; P Gutin; T L Cascino; H S Greenberg; W J Curran
Journal:  Int J Radiat Oncol Biol Phys       Date:  1999-12-01       Impact factor: 7.038

8.  Direct observation of the transition state of ultrafast electron transfer reaction of a radiosensitizing drug bromodeoxyuridine.

Authors:  C-R Wang; A Hu; Q-B Lu
Journal:  J Chem Phys       Date:  2006-06-28       Impact factor: 3.488

9.  5-Bromodeoxyuridine radiosensitization: conformation-dependent DNA damage.

Authors:  Marie-Eve Dextraze; J Richard Wagner; Darel J Hunting
Journal:  Biochemistry       Date:  2007-07-13       Impact factor: 3.162

10.  Genetics of human cell lines. III. Incorporation of 5-bromo- and 5-iododeoxyuridine into the deoxyribonucleic acid of human cells and its effect on radiation sensitivity.

Authors:  B DJORDJEVIC; W SZYBALSKI
Journal:  J Exp Med       Date:  1960-09-01       Impact factor: 14.307

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  1 in total

Review 1.  Nonadiabatic dynamics: The SHARC approach.

Authors:  Sebastian Mai; Philipp Marquetand; Leticia González
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-05-09
  1 in total

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