Literature DB >> 28319812

Exploring sequence space: harnessing chemical and biological diversity towards new peptide leads.

Richard Obexer1, Louise J Walport1, Hiroaki Suga2.   

Abstract

From their early roots in natural products, peptides now represent an expanding class of novel drugs. Their modular structures make them ideal candidates for pooled library screening approaches. Key technologies for library generation and screening, such as SICLOPPS, phage display and mRNA display, give unparalleled access to tight binding peptides. Through combination with genetic code reprogramming and chemical modifications, access to more natural product-like libraries, spanning non-canonical peptide space, is readily achievable. Recent advances in these fields enable introduction of diverse non-standard motifs, such as cyclisation and backbone methylations. Peptide discovery platforms now allow robust access to potent, highly functionalised peptides against virtually any protein of interest, with typical binding constants in the nanomolar range. Application of these optimised platforms in a drug discovery setting has the potential to significantly accelerate identification of new leads.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28319812     DOI: 10.1016/j.cbpa.2017.02.020

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  18 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

2.  Mapping Protein-Protein Interaction Interface Peptides with Jun-Fos Assisted Phage Display and Deep Sequencing.

Authors:  Wanzhi Huang; Victoria Soeung; David M Boragine; Timothy Palzkill
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3.  Deep Sequencing of a Systematic Peptide Library Reveals Conformationally-Constrained Protein Interface Peptides that Disrupt a Protein-Protein Interaction.

Authors:  David M Boragine; Wanzhi Huang; Lynn H Su; Timothy Palzkill
Journal:  Chembiochem       Date:  2021-12-07       Impact factor: 3.164

4.  Comprehensive computational design of ordered peptide macrocycles.

Authors:  Parisa Hosseinzadeh; Gaurav Bhardwaj; Vikram Khipple Mulligan; Matthew D Shortridge; Timothy W Craven; Fátima Pardo-Avila; Stephen A Rettie; David E Kim; Daniel-Adriano Silva; Yehia M Ibrahim; Ian K Webb; John R Cort; Joshua N Adkins; Gabriele Varani; David Baker
Journal:  Science       Date:  2017-12-15       Impact factor: 47.728

5.  De novo macrocyclic peptides dissect energy coupling of a heterodimeric ABC transporter by multimode allosteric inhibition.

Authors:  Erich Stefan; Richard Obexer; Susanne Hofmann; Khanh Vu Huu; Yichao Huang; Nina Morgner; Hiroaki Suga; Robert Tampé
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7.  Lasso-grafting of macrocyclic peptide pharmacophores yields multi-functional proteins.

Authors:  Emiko Mihara; Satoshi Watanabe; Nasir K Bashiruddin; Nozomi Nakamura; Kyoko Matoba; Yumi Sano; Rumit Maini; Yizhen Yin; Katsuya Sakai; Takao Arimori; Kunio Matsumoto; Hiroaki Suga; Junichi Takagi
Journal:  Nat Commun       Date:  2021-03-09       Impact factor: 14.919

8.  Mechanistic studies of non-canonical amino acid mutagenesis.

Authors:  Rachel C Fleisher; Nina Michael; Ruben L Gonzalez
Journal:  Methods Enzymol       Date:  2021-06-24       Impact factor: 1.682

9.  Compositional Bias in Naïve and Chemically-modified Phage-Displayed Libraries uncovered by Paired-end Deep Sequencing.

Authors:  Bifang He; Katrina F Tjhung; Nicholas J Bennett; Ying Chou; Andrea Rau; Jian Huang; Ratmir Derda
Journal:  Sci Rep       Date:  2018-01-19       Impact factor: 4.379

10.  Ultra-large chemical libraries for the discovery of high-affinity peptide binders.

Authors:  Anthony J Quartararo; Zachary P Gates; Bente A Somsen; Nina Hartrampf; Xiyun Ye; Arisa Shimada; Yasuhiro Kajihara; Christian Ottmann; Bradley L Pentelute
Journal:  Nat Commun       Date:  2020-06-23       Impact factor: 14.919

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