| Literature DB >> 28316825 |
Siti Aisyah Nabilah Suwardi1, See Mun Lee2, Kong Mun Lo2, Mukesh M Jotani3, Edward R T Tiekink2.
Abstract
The title compound, [Cd2(C8H8NS2)4], is a centrosymmetric dimer with both chelating and μ2-tridentate di-thio-carbamate ligands. The resulting S5 donor set defines a CdII coordination geometry inter-mediate between square-pyramidal and trigonal-bipyramidal, but tending towards the former. The packing features C-H⋯S and C-H⋯π inter-actions, which generate a three-dimensional network. The influence of these inter-actions, along with intra-dimer π-π inter-actions between chelate rings, has been investigated by an analysis of the Hirshfeld surface.Entities:
Keywords: Hirshfeld surface analysis; cadmium; crystal structure; dithiocarbamate
Year: 2017 PMID: 28316825 PMCID: PMC5347070 DOI: 10.1107/S2056989017002705
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The molecule is located about a centre of inversion and unlabelled atoms are generated by the symmetry operation (−x, 1 − y, 1 − z).
Selected geometric parameters (Å, °)
| Cd—S1 | 2.5044 (8) | C1—S2 | 1.739 (3) |
| Cd—S2 | 2.9331 (8) | C9—S3 | 1.730 (3) |
| Cd—S2i | 2.5942 (8) | C9—S4 | 1.717 (4) |
| Cd—S3 | 2.5397 (9) | C1—N1 | 1.326 (4) |
| Cd—S4 | 2.6196 (8) | C9—N2 | 1.344 (4) |
| C1—S1 | 1.716 (3) | ||
| S1—Cd—S2 | 66.15 (2) | S2—Cd—S4 | 161.85 (3) |
| S1—Cd—S3 | 138.16 (3) | S2—Cd—S2i | 92.58 (2) |
| S1—Cd—S4 | 114.48 (3) | S3—Cd—S4 | 70.93 (3) |
| S1—Cd—S2i | 104.42 (3) | S3—Cd—S2i | 114.47 (3) |
| S2—Cd—S3 | 96.36 (2) | S4—Cd—S2i | 104.38 (3) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C3–C8 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C14—H14⋯ | 0.95 | 2.99 | 3.883 (4) | 156 |
| C5—H5⋯S1iii | 0.95 | 2.75 | 3.372 (4) | 124 |
Symmetry codes: (ii) ; (iii) .
Figure 2A view of the unit-cell contents of (I) in projection down the b axis. The C—H⋯π(chelate ring) and C—H⋯S interactions are shown as purple and orange dashed lines, respectively.
Figure 3A view of the Hirshfeld surface for (I) mapped over d norm in the range −0.055 to 1.371 au.
Short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| S1⋯C4 | 3.462 (3) | − |
| S1⋯H4 | 2.94 | − |
| S3⋯H16 | 2.88 | 1 − |
| C10⋯C15 | 3.376 (5) |
|
| C7⋯H2 | 2.89 |
|
| C13⋯H7 | 2.84 | 1 − |
| C14⋯H7 | 2.87 | 1 − |
| C14⋯H10 | 2.81 |
|
| C15⋯H6 | 2.84 | 1 − |
Figure 4A view of Hirshfeld surface for (I) mapped over the electrostatic potential in the range ±0.048 au.
Figure 5Views of the Hirshfeld surface mapped over (a) d norm about a reference molecule, highlighting the intermolecular C—H⋯S interactions and short interatomic C⋯C contacts as black and red dashed lines, respectively, and (b) with shape-index property about a reference molecule. The C—H⋯π and π⋯H—C interactions are indicated with red and white dotted lines, respectively.
Figure 6Fingerprint plots for (I): (a) overall and those delineated into (b) H⋯H, (c) S⋯H/H⋯S, (d) C⋯H/H⋯C and (e) S⋯S contacts.
Percentage contributions of the different intermolecular contacts to the Hirshfeld surface in (I)
| Contact | % Contribution in (I) |
|---|---|
| H⋯H | 40.0 |
| S⋯H/H⋯S | 26.7 |
| C⋯H/H⋯C | 24.8 |
| S⋯S | 5.8 |
| Cd⋯H/H⋯Cd | 1.2 |
| N⋯H/H⋯N | 0.8 |
| Cd⋯S/S⋯Cd | 0.7 |
Experimental details
| Crystal data | |
| Chemical formula | [Cd2(C8H8NS2)4] |
|
| 953.92 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 12.7972 (6), 6.4445 (3), 22.582 (1) |
| β (°) | 98.247 (4) |
|
| 1843.11 (15) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.64 |
| Crystal size (mm) | 0.20 × 0.15 × 0.10 |
| Data collection | |
| Diffractometer | Agilent SuperNova Dual Source diffractometer with an Atlas detector |
| Absorption correction | Multi-scan ( |
|
| 0.731, 1.000 |
| No. of measured, independent and observed [ | 11881, 4894, 3804 |
|
| 0.037 |
| (sin θ/λ)max (Å−1) | 0.708 |
| Refinement | |
|
| 0.037, 0.086, 1.05 |
| No. of reflections | 4894 |
| No. of parameters | 210 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.72, −0.48 |
Computer programs: CrysAlis PRO (Agilent, 2013 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| [Cd2(C8H8NS2)4] | |
| Monoclinic, | Mo |
| Cell parameters from 4387 reflections | |
| θ = 3.4–29.8° | |
| µ = 1.64 mm−1 | |
| β = 98.247 (4)° | |
| Block, colourless | |
| 0.20 × 0.15 × 0.10 mm |
| Agilent SuperNova Dual Source diffractometer with an Atlas detector | 4894 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 3804 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 30.2°, θmin = 3.2° |
| ω scan | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | |
| 11881 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4894 reflections | Δρmax = 0.72 e Å−3 |
| 210 parameters | Δρmin = −0.48 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cd | 0.12343 (2) | 0.35538 (4) | 0.48383 (2) | 0.02641 (8) | |
| S1 | 0.02923 (7) | 0.37408 (12) | 0.37881 (4) | 0.02834 (19) | |
| S2 | 0.02121 (6) | 0.75614 (12) | 0.45307 (3) | 0.02341 (17) | |
| S3 | 0.28949 (6) | 0.50187 (12) | 0.54452 (4) | 0.02566 (18) | |
| S4 | 0.26597 (7) | 0.06179 (13) | 0.50220 (4) | 0.0311 (2) | |
| N1 | −0.09657 (19) | 0.6884 (4) | 0.34672 (11) | 0.0205 (5) | |
| N2 | 0.4316 (2) | 0.2090 (4) | 0.57566 (12) | 0.0287 (6) | |
| C1 | −0.0239 (2) | 0.6135 (5) | 0.38915 (13) | 0.0220 (6) | |
| C2 | −0.1463 (3) | 0.8929 (5) | 0.34931 (15) | 0.0286 (7) | |
| H2A | −0.2198 | 0.8754 | 0.3559 | 0.043* | |
| H2B | −0.1443 | 0.9663 | 0.3115 | 0.043* | |
| H2C | −0.1078 | 0.9736 | 0.3823 | 0.043* | |
| C3 | −0.1353 (2) | 0.5650 (5) | 0.29431 (13) | 0.0217 (6) | |
| C4 | −0.0939 (3) | 0.5954 (5) | 0.24187 (14) | 0.0271 (7) | |
| H4 | −0.0392 | 0.6940 | 0.2401 | 0.033* | |
| C5 | −0.1334 (3) | 0.4800 (5) | 0.19168 (15) | 0.0314 (8) | |
| H5 | −0.1055 | 0.4999 | 0.1553 | 0.038* | |
| C6 | −0.2119 (3) | 0.3383 (5) | 0.19425 (16) | 0.0334 (8) | |
| H6 | −0.2381 | 0.2593 | 0.1598 | 0.040* | |
| C7 | −0.2535 (3) | 0.3093 (5) | 0.24708 (17) | 0.0334 (8) | |
| H7 | −0.3084 | 0.2111 | 0.2487 | 0.040* | |
| C8 | −0.2150 (2) | 0.4235 (5) | 0.29753 (15) | 0.0271 (7) | |
| H8 | −0.2432 | 0.4045 | 0.3338 | 0.032* | |
| C9 | 0.3372 (2) | 0.2509 (5) | 0.54363 (14) | 0.0257 (7) | |
| C10 | 0.4776 (3) | 0.0001 (5) | 0.57988 (17) | 0.0398 (9) | |
| H10A | 0.5511 | 0.0070 | 0.5724 | 0.060* | |
| H10B | 0.4372 | −0.0902 | 0.5500 | 0.060* | |
| H10C | 0.4752 | −0.0560 | 0.6200 | 0.060* | |
| C11 | 0.4909 (2) | 0.3640 (5) | 0.61192 (15) | 0.0278 (7) | |
| C12 | 0.4636 (3) | 0.4133 (5) | 0.66742 (15) | 0.0303 (7) | |
| H12 | 0.4045 | 0.3484 | 0.6808 | 0.036* | |
| C13 | 0.5227 (3) | 0.5572 (6) | 0.70328 (16) | 0.0345 (8) | |
| H13 | 0.5038 | 0.5920 | 0.7412 | 0.041* | |
| C14 | 0.6088 (3) | 0.6503 (5) | 0.68420 (17) | 0.0378 (9) | |
| H14 | 0.6491 | 0.7494 | 0.7089 | 0.045* | |
| C15 | 0.6364 (3) | 0.5989 (6) | 0.62904 (18) | 0.0367 (9) | |
| H15 | 0.6965 | 0.6615 | 0.6162 | 0.044* | |
| C16 | 0.5770 (3) | 0.4566 (5) | 0.59235 (16) | 0.0329 (8) | |
| H16 | 0.5953 | 0.4232 | 0.5542 | 0.039* |
| Cd | 0.02523 (14) | 0.03538 (16) | 0.01777 (12) | 0.00772 (10) | 0.00019 (9) | 0.00105 (10) |
| S1 | 0.0369 (5) | 0.0274 (4) | 0.0186 (4) | 0.0104 (4) | −0.0034 (3) | −0.0032 (3) |
| S2 | 0.0267 (4) | 0.0251 (4) | 0.0172 (4) | 0.0002 (3) | −0.0014 (3) | −0.0024 (3) |
| S3 | 0.0252 (4) | 0.0258 (4) | 0.0251 (4) | 0.0074 (3) | 0.0005 (3) | 0.0023 (3) |
| S4 | 0.0325 (5) | 0.0277 (4) | 0.0319 (5) | 0.0082 (4) | 0.0001 (3) | −0.0026 (4) |
| N1 | 0.0237 (13) | 0.0209 (13) | 0.0161 (12) | 0.0013 (10) | −0.0002 (10) | 0.0015 (10) |
| N2 | 0.0266 (14) | 0.0273 (14) | 0.0315 (16) | 0.0099 (12) | 0.0017 (12) | 0.0024 (12) |
| C1 | 0.0239 (16) | 0.0259 (17) | 0.0168 (15) | −0.0029 (13) | 0.0051 (12) | 0.0014 (12) |
| C2 | 0.0355 (19) | 0.0213 (16) | 0.0271 (18) | 0.0041 (14) | −0.0019 (14) | 0.0021 (13) |
| C3 | 0.0238 (15) | 0.0208 (15) | 0.0184 (15) | 0.0022 (13) | −0.0039 (11) | 0.0015 (12) |
| C4 | 0.0293 (17) | 0.0289 (17) | 0.0221 (16) | −0.0056 (14) | 0.0000 (13) | 0.0004 (13) |
| C5 | 0.042 (2) | 0.0311 (18) | 0.0196 (16) | −0.0015 (16) | −0.0005 (14) | 0.0018 (14) |
| C6 | 0.0358 (19) | 0.0315 (19) | 0.0285 (19) | −0.0031 (15) | −0.0106 (14) | −0.0058 (15) |
| C7 | 0.0269 (18) | 0.0319 (18) | 0.039 (2) | −0.0059 (15) | −0.0027 (14) | −0.0007 (16) |
| C8 | 0.0249 (16) | 0.0290 (17) | 0.0267 (17) | 0.0022 (14) | 0.0017 (13) | 0.0026 (14) |
| C9 | 0.0256 (17) | 0.0294 (18) | 0.0230 (16) | 0.0072 (14) | 0.0059 (12) | 0.0042 (14) |
| C10 | 0.041 (2) | 0.033 (2) | 0.042 (2) | 0.0175 (16) | −0.0041 (16) | 0.0032 (17) |
| C11 | 0.0216 (16) | 0.0307 (18) | 0.0301 (18) | 0.0101 (14) | 0.0002 (13) | 0.0079 (14) |
| C12 | 0.0242 (17) | 0.0356 (19) | 0.0309 (19) | 0.0053 (15) | 0.0030 (14) | 0.0096 (15) |
| C13 | 0.0335 (19) | 0.039 (2) | 0.0290 (19) | 0.0069 (16) | −0.0007 (15) | 0.0040 (16) |
| C14 | 0.033 (2) | 0.033 (2) | 0.043 (2) | 0.0031 (16) | −0.0094 (16) | 0.0071 (17) |
| C15 | 0.0211 (17) | 0.038 (2) | 0.051 (2) | 0.0048 (15) | 0.0048 (15) | 0.0161 (17) |
| C16 | 0.0290 (18) | 0.0348 (19) | 0.036 (2) | 0.0103 (16) | 0.0079 (15) | 0.0112 (16) |
| Cd—S1 | 2.5044 (8) | C4—H4 | 0.9500 |
| Cd—S2 | 2.9331 (8) | C5—C6 | 1.365 (5) |
| Cd—S2i | 2.5942 (8) | C5—H5 | 0.9500 |
| Cd—S3 | 2.5397 (9) | C6—C7 | 1.387 (5) |
| Cd—S4 | 2.6196 (8) | C6—H6 | 0.9500 |
| C1—S1 | 1.716 (3) | C7—C8 | 1.386 (5) |
| C1—S2 | 1.739 (3) | C7—H7 | 0.9500 |
| S2—Cdi | 2.5942 (8) | C8—H8 | 0.9500 |
| C9—S3 | 1.730 (3) | C10—H10A | 0.9800 |
| C9—S4 | 1.717 (4) | C10—H10B | 0.9800 |
| C1—N1 | 1.326 (4) | C10—H10C | 0.9800 |
| N1—C3 | 1.453 (4) | C11—C16 | 1.380 (5) |
| N1—C2 | 1.468 (4) | C11—C12 | 1.386 (5) |
| C9—N2 | 1.344 (4) | C12—C13 | 1.383 (5) |
| N2—C11 | 1.438 (4) | C12—H12 | 0.9500 |
| N2—C10 | 1.467 (4) | C13—C14 | 1.377 (5) |
| C2—H2A | 0.9800 | C13—H13 | 0.9500 |
| C2—H2B | 0.9800 | C14—C15 | 1.383 (5) |
| C2—H2C | 0.9800 | C14—H14 | 0.9500 |
| C3—C8 | 1.378 (4) | C15—C16 | 1.387 (5) |
| C3—C4 | 1.379 (4) | C15—H15 | 0.9500 |
| C4—C5 | 1.389 (4) | C16—H16 | 0.9500 |
| S1—Cd—S2 | 66.15 (2) | C6—C5—H5 | 119.8 |
| S1—Cd—S3 | 138.16 (3) | C4—C5—H5 | 119.8 |
| S1—Cd—S4 | 114.48 (3) | C5—C6—C7 | 120.1 (3) |
| S1—Cd—S2i | 104.42 (3) | C5—C6—H6 | 119.9 |
| S2—Cd—S3 | 96.36 (2) | C7—C6—H6 | 119.9 |
| S2—Cd—S4 | 161.85 (3) | C8—C7—C6 | 120.0 (3) |
| S2—Cd—S2i | 92.58 (2) | C8—C7—H7 | 120.0 |
| S3—Cd—S4 | 70.93 (3) | C6—C7—H7 | 120.0 |
| S3—Cd—S2i | 114.47 (3) | C3—C8—C7 | 119.1 (3) |
| S4—Cd—S2i | 104.38 (3) | C3—C8—H8 | 120.5 |
| C1—S1—Cd | 93.49 (11) | C7—C8—H8 | 120.5 |
| C1—S2—Cdi | 97.54 (10) | N2—C9—S4 | 121.1 (2) |
| C1—S2—Cd | 79.34 (11) | N2—C9—S3 | 118.3 (3) |
| Cdi—S2—Cd | 87.43 (2) | S4—C9—S3 | 120.62 (19) |
| C9—S3—Cd | 85.16 (11) | N2—C10—H10A | 109.5 |
| C9—S4—Cd | 82.93 (11) | N2—C10—H10B | 109.5 |
| C1—N1—C3 | 120.7 (3) | H10A—C10—H10B | 109.5 |
| C1—N1—C2 | 124.1 (3) | N2—C10—H10C | 109.5 |
| C3—N1—C2 | 115.2 (2) | H10A—C10—H10C | 109.5 |
| C9—N2—C11 | 121.8 (3) | H10B—C10—H10C | 109.5 |
| C9—N2—C10 | 122.8 (3) | C16—C11—C12 | 120.5 (3) |
| C11—N2—C10 | 115.3 (3) | C16—C11—N2 | 119.9 (3) |
| N1—C1—S1 | 118.6 (2) | C12—C11—N2 | 119.6 (3) |
| N1—C1—S2 | 121.5 (2) | C13—C12—C11 | 119.7 (3) |
| S1—C1—S2 | 119.82 (18) | C13—C12—H12 | 120.1 |
| N1—C2—H2A | 109.5 | C11—C12—H12 | 120.1 |
| N1—C2—H2B | 109.5 | C14—C13—C12 | 120.3 (3) |
| H2A—C2—H2B | 109.5 | C14—C13—H13 | 119.9 |
| N1—C2—H2C | 109.5 | C12—C13—H13 | 119.9 |
| H2A—C2—H2C | 109.5 | C13—C14—C15 | 119.8 (4) |
| H2B—C2—H2C | 109.5 | C13—C14—H14 | 120.1 |
| C8—C3—C4 | 121.2 (3) | C15—C14—H14 | 120.1 |
| C8—C3—N1 | 119.2 (3) | C14—C15—C16 | 120.5 (3) |
| C4—C3—N1 | 119.6 (3) | C14—C15—H15 | 119.8 |
| C3—C4—C5 | 119.0 (3) | C16—C15—H15 | 119.8 |
| C3—C4—H4 | 120.5 | C11—C16—C15 | 119.3 (3) |
| C5—C4—H4 | 120.5 | C11—C16—H16 | 120.4 |
| C6—C5—C4 | 120.5 (3) | C15—C16—H16 | 120.4 |
| C3—N1—C1—S1 | 3.9 (4) | C6—C7—C8—C3 | −0.1 (5) |
| C2—N1—C1—S1 | −178.4 (2) | C11—N2—C9—S4 | −178.2 (2) |
| C3—N1—C1—S2 | −178.5 (2) | C10—N2—C9—S4 | −3.1 (4) |
| C2—N1—C1—S2 | −0.7 (4) | C11—N2—C9—S3 | 2.5 (4) |
| Cd—S1—C1—N1 | −170.8 (2) | C10—N2—C9—S3 | 177.6 (2) |
| Cd—S1—C1—S2 | 11.52 (17) | Cd—S4—C9—N2 | 174.9 (3) |
| Cdi—S2—C1—N1 | 86.5 (2) | Cd—S4—C9—S3 | −5.81 (16) |
| Cd—S2—C1—N1 | 172.4 (2) | Cd—S3—C9—N2 | −174.7 (3) |
| Cdi—S2—C1—S1 | −95.91 (17) | Cd—S3—C9—S4 | 5.96 (17) |
| Cd—S2—C1—S1 | −9.98 (15) | C9—N2—C11—C16 | −103.8 (4) |
| C1—N1—C3—C8 | 83.8 (4) | C10—N2—C11—C16 | 80.7 (4) |
| C2—N1—C3—C8 | −94.1 (3) | C9—N2—C11—C12 | 78.8 (4) |
| C1—N1—C3—C4 | −98.0 (3) | C10—N2—C11—C12 | −96.7 (4) |
| C2—N1—C3—C4 | 84.1 (3) | C16—C11—C12—C13 | 0.4 (5) |
| C8—C3—C4—C5 | −0.3 (5) | N2—C11—C12—C13 | 177.8 (3) |
| N1—C3—C4—C5 | −178.4 (3) | C11—C12—C13—C14 | −0.5 (5) |
| C3—C4—C5—C6 | −0.1 (5) | C12—C13—C14—C15 | −0.2 (5) |
| C4—C5—C6—C7 | 0.4 (5) | C13—C14—C15—C16 | 1.0 (5) |
| C5—C6—C7—C8 | −0.4 (5) | C12—C11—C16—C15 | 0.4 (5) |
| C4—C3—C8—C7 | 0.4 (5) | N2—C11—C16—C15 | −177.0 (3) |
| N1—C3—C8—C7 | 178.5 (3) | C14—C15—C16—C11 | −1.1 (5) |
| H··· | ||||
| C14—H14··· | 0.95 | 2.99 | 3.883 (4) | 156 |
| C5—H5···S1iii | 0.95 | 2.75 | 3.372 (4) | 124 |