| Literature DB >> 28316818 |
Enis Nadia Md Yusof1, Thahira B S A Ravoof1, Mohamed I M Tahir1, Mukesh M Jotani2, Edward R T Tiekink3.
Abstract
The complete mol-ecule of the title hydrazine carbodi-thio-ate complex, [Ni(C19H21N2S2)2], is generated by the application of a centre of inversion. The NiII atom is N,S-chelated by two hydrazinecarbodi-thio-ate ligands, which provide a trans-N2S2 donor set that defines a distorted square-planar geometry. The conformation of the five-membered chelate ring is an envelope with the NiII atom being the flap atom. In the crystal, p-tolyl-C-H⋯π(benzene- i Pr), i Pr-C-H⋯π(p-tol-yl) and π-π inter-actions [between p-tolyl rings with inter-centroid distance = 3.8051 (12) Å] help to consolidate the three-dimensional architecture. The analysis of the Hirshfeld surface confirms the importance of H-atom contacts in establishing the packing.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; hydrazine carbodithioate; nickel(II)
Year: 2017 PMID: 28316818 PMCID: PMC5347063 DOI: 10.1107/S2056989017002419
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The NiII atom is situated on a centre of inversion. Unlabelled atoms are related by the symmetry operation (1 − x, 1 − y, 1 − z).
Selected bond lengths (Å)
| Ni—S1 | 2.1747 (5) | C1—S2 | 1.7479 (18) |
| Ni—N2 | 1.9137 (15) | C12—S2 | 1.824 (2) |
| C1—S1 | 1.7296 (19) |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the (C3–C8) and (C13–C18) rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯S1i | 0.95 | 2.48 | 3.0691 (17) | 120 |
| C4—H4⋯N1 | 0.95 | 2.40 | 2.865 (2) | 110 |
| C17—H17⋯ | 0.95 | 2.84 | 3.761 (2) | 164 |
| C11—H11 | 0.98 | 2.96 | 3.880 (3) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The molecular packing in (I): a view of the unit-cell contents shown in projection down the b axis. The π–π and C—H⋯π interactions are shown as orange and purple dashed lines, respectively.
Figure 3A view of the Hirshfeld surface for (I) mapped over the electrostatic potential over the range ±0.025 au.
Figure 4The view of the Hirshfeld surface mapped over d e. The bright-orange spots near rings indicate their involvement in C—H⋯π interactions.
Figure 5Two views (a) and (b) of the Hirshfeld surface mapped with shape-index property about a reference molecule. The C—H⋯π and π⋯H—C interactions in both views are indicated with red and white dotted lines, respectively. The blue dotted lines in (a) indicate π–π stacking between p-tolyl rings.
Figure 6The two-dimensional fingerprint plots for (I): (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) S⋯H/H⋯S, (e) N⋯H/H⋯N and (f) C⋯C interactions.
Percentage contribution of the different intermolecular contacts to the Hirshfeld surface in (I)
| Contact | % contribution |
|---|---|
| H⋯H | 52.5 |
| C⋯H/H⋯C | 22.2 |
| S⋯H/H⋯S | 15.3 |
| N⋯H/H⋯N | 3.3 |
| C⋯C | 2.1 |
| Ni⋯H/H⋯Ni | 2.0 |
| S⋯N/N⋯S | 1.8 |
| C⋯S/S⋯C | 0.4 |
| S⋯S | 0.3 |
| C⋯N/N⋯C | 0.1 |
Short interatomic contacts in (I)
| Contact | distance | symmetry operation |
|---|---|---|
| C16⋯H10 | 2.84 |
|
| C19⋯H5 | 2.88 | - |
Figure 7Simplified molecular structure diagrams of (I)–(IV). All C atoms, except those of the C—N—N—C backbone, are represented as small black spheres and H atoms have been omitted.
Experimental details
| Crystal data | |
| Chemical formula | [Ni(C19H21N2S2)2] |
|
| 741.70 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 11.5799 (7), 7.3910 (3), 21.9848 (16) |
| β (°) | 103.033 (7) |
|
| 1833.1 (2) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.79 |
| Crystal size (mm) | 0.30 × 0.20 × 0.10 |
| Data collection | |
| Diffractometer | Agilent Xcalibur Eos Gemini |
| Absorption correction | Multi-scan ( |
|
| 0.895, 1.000 |
| No. of measured, independent and observed [ | 8467, 4192, 3393 |
|
| 0.030 |
| (sin θ/λ)max (Å−1) | 0.674 |
| Refinement | |
|
| 0.035, 0.085, 1.02 |
| No. of reflections | 4192 |
| No. of parameters | 217 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.48, −0.24 |
Computer programs: CrysAlis PRO (Agilent, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| [Ni(C19H21N2S2)2] | |
| Monoclinic, | Mo |
| Cell parameters from 3077 reflections | |
| θ = 2.3–28.7° | |
| µ = 0.79 mm−1 | |
| β = 103.033 (7)° | |
| Prism, brown | |
| 0.30 × 0.20 × 0.10 mm |
| Agilent Xcalibur Eos Gemini diffractometer | 4192 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 3393 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 28.6°, θmin = 2.3° |
| ω scans | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | |
| 8467 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4192 reflections | Δρmax = 0.48 e Å−3 |
| 217 parameters | Δρmin = −0.24 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ni | 0.5000 | 0.5000 | 0.5000 | 0.01242 (9) | |
| S1 | 0.46625 (4) | 0.27399 (6) | 0.43507 (2) | 0.01691 (12) | |
| S2 | 0.29415 (4) | −0.01653 (6) | 0.43496 (2) | 0.01892 (12) | |
| N1 | 0.36782 (13) | 0.1991 (2) | 0.53197 (7) | 0.0153 (3) | |
| N2 | 0.43911 (13) | 0.3485 (2) | 0.55606 (7) | 0.0141 (3) | |
| C1 | 0.37730 (16) | 0.1603 (2) | 0.47593 (9) | 0.0150 (4) | |
| C2 | 0.45497 (16) | 0.3715 (2) | 0.61599 (9) | 0.0156 (4) | |
| H2 | 0.5057 | 0.4692 | 0.6325 | 0.019* | |
| C3 | 0.40706 (16) | 0.2706 (2) | 0.66191 (9) | 0.0158 (4) | |
| C4 | 0.37058 (16) | 0.0885 (3) | 0.65720 (9) | 0.0173 (4) | |
| H4 | 0.3835 | 0.0158 | 0.6237 | 0.021* | |
| C5 | 0.31580 (17) | 0.0154 (3) | 0.70149 (9) | 0.0191 (4) | |
| H5 | 0.2931 | −0.1084 | 0.6981 | 0.023* | |
| C6 | 0.29286 (17) | 0.1173 (3) | 0.75084 (9) | 0.0192 (4) | |
| C7 | 0.33687 (18) | 0.2946 (3) | 0.75775 (9) | 0.0215 (4) | |
| H7 | 0.3273 | 0.3649 | 0.7925 | 0.026* | |
| C8 | 0.39416 (17) | 0.3687 (3) | 0.71472 (9) | 0.0197 (4) | |
| H8 | 0.4252 | 0.4879 | 0.7210 | 0.024* | |
| C9 | 0.21599 (19) | 0.0493 (3) | 0.79346 (10) | 0.0247 (5) | |
| H9 | 0.2445 | 0.1068 | 0.8353 | 0.030* | |
| C10 | 0.0885 (2) | 0.1130 (4) | 0.76693 (13) | 0.0426 (7) | |
| H10A | 0.0864 | 0.2455 | 0.7655 | 0.064* | |
| H10B | 0.0371 | 0.0696 | 0.7937 | 0.064* | |
| H10C | 0.0604 | 0.0646 | 0.7247 | 0.064* | |
| C11 | 0.2185 (2) | −0.1560 (3) | 0.80247 (11) | 0.0298 (5) | |
| H11A | 0.1814 | −0.2148 | 0.7629 | 0.045* | |
| H11B | 0.1749 | −0.1879 | 0.8343 | 0.045* | |
| H11C | 0.3009 | −0.1968 | 0.8159 | 0.045* | |
| C12 | 0.21972 (18) | −0.1039 (3) | 0.49369 (9) | 0.0202 (4) | |
| H12A | 0.2782 | −0.1605 | 0.5283 | 0.024* | |
| H12B | 0.1800 | −0.0041 | 0.5110 | 0.024* | |
| C13 | 0.12954 (16) | −0.2422 (3) | 0.46281 (9) | 0.0167 (4) | |
| C14 | 0.15875 (17) | −0.4252 (3) | 0.46395 (9) | 0.0195 (4) | |
| H14 | 0.2363 | −0.4633 | 0.4841 | 0.023* | |
| C15 | 0.07536 (19) | −0.5521 (3) | 0.43589 (10) | 0.0227 (4) | |
| H15 | 0.0966 | −0.6764 | 0.4372 | 0.027* | |
| C16 | −0.03838 (18) | −0.5005 (3) | 0.40599 (10) | 0.0212 (4) | |
| C17 | −0.06739 (17) | −0.3171 (3) | 0.40435 (10) | 0.0230 (4) | |
| H17 | −0.1447 | −0.2791 | 0.3838 | 0.028* | |
| C18 | 0.01567 (17) | −0.1900 (3) | 0.43244 (10) | 0.0211 (4) | |
| H18 | −0.0054 | −0.0656 | 0.4309 | 0.025* | |
| C19 | −0.1304 (2) | −0.6381 (3) | 0.37581 (11) | 0.0329 (5) | |
| H19A | −0.1946 | −0.6411 | 0.3982 | 0.049* | |
| H19B | −0.0936 | −0.7580 | 0.3775 | 0.049* | |
| H19C | −0.1626 | −0.6045 | 0.3322 | 0.049* |
| Ni | 0.01367 (16) | 0.01287 (16) | 0.01220 (17) | −0.00309 (12) | 0.00605 (13) | −0.00017 (13) |
| S1 | 0.0214 (2) | 0.0164 (2) | 0.0156 (2) | −0.00518 (18) | 0.00956 (19) | −0.00249 (19) |
| S2 | 0.0239 (2) | 0.0188 (2) | 0.0157 (2) | −0.00893 (18) | 0.0080 (2) | −0.0039 (2) |
| N1 | 0.0169 (8) | 0.0147 (7) | 0.0157 (8) | −0.0057 (6) | 0.0062 (6) | −0.0015 (7) |
| N2 | 0.0141 (7) | 0.0131 (7) | 0.0160 (8) | −0.0033 (6) | 0.0054 (6) | −0.0013 (6) |
| C1 | 0.0160 (9) | 0.0122 (8) | 0.0174 (9) | −0.0010 (7) | 0.0049 (8) | 0.0020 (7) |
| C2 | 0.0154 (9) | 0.0155 (9) | 0.0165 (10) | −0.0035 (7) | 0.0049 (8) | 0.0003 (8) |
| C3 | 0.0146 (9) | 0.0205 (9) | 0.0127 (9) | −0.0035 (7) | 0.0037 (7) | 0.0012 (8) |
| C4 | 0.0185 (9) | 0.0198 (9) | 0.0144 (9) | −0.0022 (7) | 0.0052 (8) | −0.0012 (8) |
| C5 | 0.0202 (9) | 0.0200 (9) | 0.0169 (10) | −0.0057 (7) | 0.0040 (8) | 0.0018 (8) |
| C6 | 0.0187 (9) | 0.0255 (10) | 0.0133 (9) | −0.0029 (8) | 0.0037 (8) | 0.0027 (8) |
| C7 | 0.0275 (11) | 0.0258 (10) | 0.0126 (9) | −0.0035 (8) | 0.0074 (8) | −0.0033 (8) |
| C8 | 0.0218 (10) | 0.0214 (10) | 0.0159 (10) | −0.0051 (8) | 0.0040 (8) | 0.0001 (8) |
| C9 | 0.0275 (11) | 0.0317 (11) | 0.0167 (10) | −0.0059 (9) | 0.0089 (9) | 0.0021 (9) |
| C10 | 0.0313 (13) | 0.0582 (17) | 0.0461 (16) | 0.0062 (11) | 0.0250 (12) | 0.0199 (14) |
| C11 | 0.0330 (12) | 0.0345 (12) | 0.0240 (11) | −0.0100 (10) | 0.0109 (10) | 0.0080 (10) |
| C12 | 0.0232 (10) | 0.0227 (10) | 0.0173 (10) | −0.0079 (8) | 0.0101 (8) | −0.0014 (8) |
| C13 | 0.0170 (9) | 0.0199 (9) | 0.0156 (9) | −0.0052 (7) | 0.0086 (8) | −0.0010 (8) |
| C14 | 0.0199 (10) | 0.0203 (9) | 0.0189 (10) | 0.0007 (8) | 0.0059 (8) | 0.0015 (8) |
| C15 | 0.0326 (11) | 0.0165 (9) | 0.0207 (10) | −0.0021 (8) | 0.0094 (9) | 0.0000 (8) |
| C16 | 0.0260 (10) | 0.0230 (10) | 0.0159 (10) | −0.0113 (8) | 0.0074 (8) | −0.0010 (8) |
| C17 | 0.0155 (9) | 0.0301 (11) | 0.0225 (11) | −0.0019 (8) | 0.0025 (8) | 0.0032 (9) |
| C18 | 0.0222 (10) | 0.0174 (9) | 0.0251 (11) | −0.0004 (8) | 0.0080 (9) | 0.0024 (9) |
| C19 | 0.0376 (13) | 0.0351 (12) | 0.0251 (12) | −0.0209 (10) | 0.0051 (10) | −0.0034 (10) |
| Ni—S1 | 2.1747 (5) | C9—H9 | 1.0000 |
| Ni—N2 | 1.9137 (15) | C10—H10A | 0.9800 |
| Ni—N2i | 1.9138 (15) | C10—H10B | 0.9800 |
| Ni—S1i | 2.1746 (5) | C10—H10C | 0.9800 |
| C1—S1 | 1.7296 (19) | C11—H11A | 0.9800 |
| C1—S2 | 1.7479 (18) | C11—H11B | 0.9800 |
| C12—S2 | 1.824 (2) | C11—H11C | 0.9800 |
| N1—C1 | 1.294 (2) | C12—C13 | 1.509 (2) |
| N1—N2 | 1.408 (2) | C12—H12A | 0.9900 |
| N2—C2 | 1.300 (2) | C12—H12B | 0.9900 |
| C2—C3 | 1.461 (3) | C13—C18 | 1.391 (3) |
| C2—H2 | 0.9500 | C13—C14 | 1.393 (3) |
| C3—C8 | 1.405 (3) | C14—C15 | 1.387 (3) |
| C3—C4 | 1.408 (3) | C14—H14 | 0.9500 |
| C4—C5 | 1.386 (3) | C15—C16 | 1.386 (3) |
| C4—H4 | 0.9500 | C15—H15 | 0.9500 |
| C5—C6 | 1.395 (3) | C16—C17 | 1.395 (3) |
| C5—H5 | 0.9500 | C16—C19 | 1.514 (3) |
| C6—C7 | 1.401 (3) | C17—C18 | 1.386 (3) |
| C6—C9 | 1.516 (3) | C17—H17 | 0.9500 |
| C7—C8 | 1.385 (3) | C18—H18 | 0.9500 |
| C7—H7 | 0.9500 | C19—H19A | 0.9800 |
| C8—H8 | 0.9500 | C19—H19B | 0.9800 |
| C9—C11 | 1.529 (3) | C19—H19C | 0.9800 |
| C9—C10 | 1.534 (3) | ||
| N2—Ni—N2i | 180.00 (7) | C9—C10—H10A | 109.5 |
| N2—Ni—S1i | 93.71 (5) | C9—C10—H10B | 109.5 |
| N2i—Ni—S1i | 86.29 (5) | H10A—C10—H10B | 109.5 |
| N2—Ni—S1 | 86.30 (5) | C9—C10—H10C | 109.5 |
| N2i—Ni—S1 | 93.70 (5) | H10A—C10—H10C | 109.5 |
| S1i—Ni—S1 | 180.0 | H10B—C10—H10C | 109.5 |
| C1—S1—Ni | 94.14 (6) | C9—C11—H11A | 109.5 |
| C1—S2—C12 | 101.14 (9) | C9—C11—H11B | 109.5 |
| C1—N1—N2 | 111.31 (15) | H11A—C11—H11B | 109.5 |
| C2—N2—N1 | 114.86 (15) | C9—C11—H11C | 109.5 |
| C2—N2—Ni | 126.01 (13) | H11A—C11—H11C | 109.5 |
| N1—N2—Ni | 119.11 (12) | H11B—C11—H11C | 109.5 |
| N1—C1—S1 | 125.12 (14) | C13—C12—S2 | 108.11 (14) |
| N1—C1—S2 | 120.09 (14) | C13—C12—H12A | 110.1 |
| S1—C1—S2 | 114.77 (11) | S2—C12—H12A | 110.1 |
| N2—C2—C3 | 130.15 (17) | C13—C12—H12B | 110.1 |
| N2—C2—H2 | 114.9 | S2—C12—H12B | 110.1 |
| C3—C2—H2 | 114.9 | H12A—C12—H12B | 108.4 |
| C8—C3—C4 | 117.91 (18) | C18—C13—C14 | 118.53 (17) |
| C8—C3—C2 | 115.80 (16) | C18—C13—C12 | 120.86 (17) |
| C4—C3—C2 | 126.26 (18) | C14—C13—C12 | 120.60 (17) |
| C5—C4—C3 | 119.90 (18) | C15—C14—C13 | 120.43 (18) |
| C5—C4—H4 | 120.1 | C15—C14—H14 | 119.8 |
| C3—C4—H4 | 120.1 | C13—C14—H14 | 119.8 |
| C4—C5—C6 | 122.24 (18) | C16—C15—C14 | 121.13 (19) |
| C4—C5—H5 | 118.9 | C16—C15—H15 | 119.4 |
| C6—C5—H5 | 118.9 | C14—C15—H15 | 119.4 |
| C5—C6—C7 | 117.45 (18) | C15—C16—C17 | 118.47 (18) |
| C5—C6—C9 | 122.87 (18) | C15—C16—C19 | 121.53 (19) |
| C7—C6—C9 | 119.53 (18) | C17—C16—C19 | 120.00 (19) |
| C8—C7—C6 | 120.95 (19) | C18—C17—C16 | 120.55 (18) |
| C8—C7—H7 | 119.5 | C18—C17—H17 | 119.7 |
| C6—C7—H7 | 119.5 | C16—C17—H17 | 119.7 |
| C7—C8—C3 | 121.12 (18) | C17—C18—C13 | 120.87 (18) |
| C7—C8—H8 | 119.4 | C17—C18—H18 | 119.6 |
| C3—C8—H8 | 119.4 | C13—C18—H18 | 119.6 |
| C6—C9—C11 | 114.35 (18) | C16—C19—H19A | 109.5 |
| C6—C9—C10 | 108.19 (18) | C16—C19—H19B | 109.5 |
| C11—C9—C10 | 110.02 (19) | H19A—C19—H19B | 109.5 |
| C6—C9—H9 | 108.0 | C16—C19—H19C | 109.5 |
| C11—C9—H9 | 108.0 | H19A—C19—H19C | 109.5 |
| C10—C9—H9 | 108.0 | H19B—C19—H19C | 109.5 |
| C1—N1—N2—C2 | −165.61 (17) | C4—C3—C8—C7 | −6.2 (3) |
| C1—N1—N2—Ni | 15.80 (19) | C2—C3—C8—C7 | 172.25 (17) |
| N2—N1—C1—S1 | 0.5 (2) | C5—C6—C9—C11 | 30.3 (3) |
| N2—N1—C1—S2 | −178.25 (12) | C7—C6—C9—C11 | −154.27 (19) |
| Ni—S1—C1—N1 | −12.72 (17) | C5—C6—C9—C10 | −92.6 (2) |
| Ni—S1—C1—S2 | 166.05 (9) | C7—C6—C9—C10 | 82.8 (2) |
| C12—S2—C1—N1 | −3.28 (18) | C1—S2—C12—C13 | 171.91 (13) |
| C12—S2—C1—S1 | 177.88 (11) | S2—C12—C13—C18 | −86.5 (2) |
| N1—N2—C2—C3 | −2.5 (3) | S2—C12—C13—C14 | 93.3 (2) |
| Ni—N2—C2—C3 | 176.01 (15) | C18—C13—C14—C15 | −0.6 (3) |
| N2—C2—C3—C8 | −152.0 (2) | C12—C13—C14—C15 | 179.55 (19) |
| N2—C2—C3—C4 | 26.3 (3) | C13—C14—C15—C16 | 0.2 (3) |
| C8—C3—C4—C5 | 4.7 (3) | C14—C15—C16—C17 | 0.4 (3) |
| C2—C3—C4—C5 | −173.58 (18) | C14—C15—C16—C19 | −179.4 (2) |
| C3—C4—C5—C6 | 1.2 (3) | C15—C16—C17—C18 | −0.5 (3) |
| C4—C5—C6—C7 | −5.6 (3) | C19—C16—C17—C18 | 179.2 (2) |
| C4—C5—C6—C9 | 169.86 (18) | C16—C17—C18—C13 | 0.0 (3) |
| C5—C6—C7—C8 | 4.1 (3) | C14—C13—C18—C17 | 0.5 (3) |
| C9—C6—C7—C8 | −171.54 (18) | C12—C13—C18—C17 | −179.67 (19) |
| C6—C7—C8—C3 | 1.8 (3) |
| H··· | ||||
| C2—H2···S1i | 0.95 | 2.48 | 3.0691 (17) | 120 |
| C4—H4···N1 | 0.95 | 2.40 | 2.865 (2) | 110 |
| C17—H17··· | 0.95 | 2.84 | 3.761 (2) | 164 |
| C11—H11 | 0.98 | 2.96 | 3.880 (3) | 158 |