| Literature DB >> 28316803 |
Van Tuyen Nguyen1, Elena A Sorokina2, Anna V Listratova2, Leonid G Voskressensky2, Nikolai N Lobanov3, Pavel V Dorovatovskii4, Yan V Zubavichus4, Victor N Khrustalev5.
Abstract
The title compound, C20H24N2O4, is the product of a ring-expansion reaction from a seven-membered hexa-hydro-azepine to a nine-membered azonine. The azonine ring of the mol-ecule adopts a chair-boat conformation. In the crystal, mol-ecules are linked by bifurcated N-H⋯(O,O) hydrogen bonds, generating [010] zigzag chains. The title compound shows inhibitory activity against acetyl-cholinesterase and butyrylcholinesterase, and might be considered as a candidate for the design of new types of anti-Alzheimer's drugs.Entities:
Keywords: Alzheimer’s disease; azoninoindoles; crystal structure; natural alkaloids; synchrotron radiation
Year: 2017 PMID: 28316803 PMCID: PMC5347048 DOI: 10.1107/S205698901700161X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The synthesis of dimethyl 4-ethyl-1,4,5,6,7,8-hexahydroazonino[5,6-b]indole-2,3-dicarboxylate, (I), in methanol.
Figure 2The molecular structure of (I). Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N8—H8⋯O1i | 0.891 (17) | 2.234 (18) | 3.0690 (18) | 155.7 (14) |
| N8—H8⋯O3i | 0.891 (17) | 2.546 (16) | 3.1029 (16) | 121.2 (12) |
Symmetry code: (i) .
Figure 3The crystal packing of (I), viewed along the crystallographic a axis. Dashed and dotted lines indicate the bifurcated N—H⋯(O,O) hydrogen bonds.
Experimental details
| Crystal data | |
| Chemical formula | C20H24N2O4 |
|
| 356.41 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.5900 (17), 10.450 (2), 20.670 (4) |
| β (°) | 98.45 (3) |
|
| 1835.3 (6) |
|
| 4 |
| Radiation type | Synchrotron, λ = 0.96990 Å |
| μ (mm−1) | 0.19 |
| Crystal size (mm) | 0.20 × 0.08 × 0.05 |
| Data collection | |
| Diffractometer | Rayonix SX165 CCD |
| Absorption correction | Multi-scan ( |
|
| 0.960, 0.990 |
| No. of measured, independent and observed [ | 20559, 3894, 3123 |
|
| 0.068 |
| (sin θ/λ)max (Å−1) | 0.641 |
| Refinement | |
|
| 0.046, 0.122, 1.01 |
| No. of reflections | 3894 |
| No. of parameters | 242 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.34, −0.24 |
Computer programs: Automar (MarXperts, 2015 ▸), iMosflm (Battye et al., 2011 ▸) and SHELXTL (Sheldrick, 2015 ▸).
| C20H24N2O4 | |
| Monoclinic, | Synchrotron radiation, λ = 0.96990 Å |
| Cell parameters from 600 reflections | |
| θ = 3.8–38.0° | |
| µ = 0.19 mm−1 | |
| β = 98.45 (3)° | |
| Prism, colourless | |
| 0.20 × 0.08 × 0.05 mm |
| Rayonix SX165 CCD diffractometer | 3123 reflections with |
| /f scan | |
| Absorption correction: multi-scan ( | θmax = 38.5°, θmin = 3.8° |
| 20559 measured reflections | |
| 3894 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3894 reflections | Δρmax = 0.34 e Å−3 |
| 242 parameters | Δρmin = −0.24 e Å−3 |
| 0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: difference Fourier map | Extinction coefficient: 0.0139 (16) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.63858 (11) | 0.12498 (9) | 0.59679 (5) | 0.0243 (3) | |
| O2 | 0.85193 (11) | 0.25114 (9) | 0.61630 (4) | 0.0223 (3) | |
| O3 | 0.27706 (12) | 0.17391 (10) | 0.54825 (5) | 0.0265 (3) | |
| O4 | 0.45470 (11) | 0.26071 (9) | 0.49055 (4) | 0.0224 (3) | |
| C1 | 0.68135 (16) | 0.46000 (13) | 0.65876 (6) | 0.0200 (3) | |
| H1A | 0.7916 | 0.4641 | 0.6501 | 0.024* | |
| H1B | 0.6278 | 0.5385 | 0.6402 | 0.024* | |
| C2 | 0.60249 (16) | 0.34538 (13) | 0.62131 (6) | 0.0186 (3) | |
| C3 | 0.44674 (16) | 0.34394 (13) | 0.59639 (6) | 0.0187 (3) | |
| N4 | 0.33815 (13) | 0.42675 (11) | 0.61889 (5) | 0.0201 (3) | |
| C5 | 0.30356 (16) | 0.39814 (14) | 0.68573 (6) | 0.0217 (3) | |
| H5A | 0.3899 | 0.3452 | 0.7088 | 0.026* | |
| H5B | 0.2055 | 0.3471 | 0.6821 | 0.026* | |
| C6 | 0.28472 (17) | 0.51732 (14) | 0.72650 (6) | 0.0245 (3) | |
| H6A | 0.2598 | 0.4909 | 0.7698 | 0.029* | |
| H6B | 0.1950 | 0.5684 | 0.7046 | 0.029* | |
| C7 | 0.43311 (17) | 0.60151 (14) | 0.73627 (6) | 0.0240 (3) | |
| H7A | 0.4487 | 0.6391 | 0.6937 | 0.029* | |
| H7B | 0.4179 | 0.6726 | 0.7664 | 0.029* | |
| C7A | 0.57725 (16) | 0.52745 (13) | 0.76366 (6) | 0.0210 (3) | |
| N8 | 0.61170 (14) | 0.50489 (12) | 0.83032 (5) | 0.0225 (3) | |
| H8 | 0.5647 (19) | 0.5452 (16) | 0.8602 (8) | 0.027* | |
| C8A | 0.74364 (16) | 0.42812 (14) | 0.84258 (6) | 0.0216 (3) | |
| C9 | 0.82348 (17) | 0.38193 (14) | 0.90185 (6) | 0.0256 (3) | |
| H9 | 0.7891 | 0.4019 | 0.9423 | 0.031* | |
| C10 | 0.95495 (18) | 0.30578 (15) | 0.89926 (7) | 0.0287 (4) | |
| H10 | 1.0110 | 0.2723 | 0.9387 | 0.034* | |
| C11 | 1.00664 (17) | 0.27727 (15) | 0.83940 (7) | 0.0274 (3) | |
| H11 | 1.0976 | 0.2256 | 0.8391 | 0.033* | |
| C12 | 0.92688 (17) | 0.32340 (14) | 0.78055 (7) | 0.0237 (3) | |
| H12 | 0.9627 | 0.3035 | 0.7404 | 0.028* | |
| C12A | 0.79257 (16) | 0.39984 (13) | 0.78146 (6) | 0.0200 (3) | |
| C12B | 0.68382 (16) | 0.46324 (13) | 0.73182 (6) | 0.0196 (3) | |
| C13 | 0.69611 (15) | 0.23057 (13) | 0.60961 (6) | 0.0188 (3) | |
| C14 | 0.94677 (17) | 0.13776 (14) | 0.60964 (7) | 0.0262 (3) | |
| H14A | 0.9175 | 0.1012 | 0.5659 | 0.039* | |
| H14B | 0.9282 | 0.0744 | 0.6426 | 0.039* | |
| H14C | 1.0584 | 0.1613 | 0.6159 | 0.039* | |
| C15 | 0.38326 (16) | 0.24798 (13) | 0.54379 (6) | 0.0196 (3) | |
| C16 | 0.41346 (18) | 0.16510 (15) | 0.44026 (7) | 0.0284 (4) | |
| H16A | 0.4619 | 0.1872 | 0.4017 | 0.043* | |
| H16B | 0.2988 | 0.1622 | 0.4283 | 0.043* | |
| H16C | 0.4517 | 0.0812 | 0.4568 | 0.043* | |
| C17 | 0.19643 (16) | 0.46212 (14) | 0.57286 (6) | 0.0230 (3) | |
| H17A | 0.1268 | 0.5155 | 0.5959 | 0.028* | |
| H17B | 0.1380 | 0.3835 | 0.5575 | 0.028* | |
| C18 | 0.23772 (18) | 0.53519 (15) | 0.51430 (7) | 0.0291 (4) | |
| H18A | 0.1409 | 0.5590 | 0.4856 | 0.044* | |
| H18B | 0.3025 | 0.4811 | 0.4901 | 0.044* | |
| H18C | 0.2965 | 0.6127 | 0.5293 | 0.044* |
| O1 | 0.0240 (6) | 0.0204 (6) | 0.0279 (5) | −0.0006 (4) | 0.0022 (4) | −0.0029 (4) |
| O2 | 0.0184 (5) | 0.0221 (6) | 0.0265 (5) | 0.0014 (4) | 0.0033 (4) | −0.0013 (4) |
| O3 | 0.0249 (6) | 0.0291 (6) | 0.0250 (5) | −0.0061 (4) | 0.0027 (4) | −0.0020 (4) |
| O4 | 0.0268 (6) | 0.0254 (6) | 0.0151 (4) | −0.0018 (4) | 0.0037 (4) | −0.0034 (4) |
| C1 | 0.0205 (7) | 0.0204 (7) | 0.0190 (6) | −0.0003 (5) | 0.0024 (5) | −0.0005 (5) |
| C2 | 0.0210 (7) | 0.0206 (7) | 0.0143 (6) | 0.0001 (5) | 0.0027 (5) | 0.0003 (5) |
| C3 | 0.0230 (7) | 0.0186 (7) | 0.0144 (6) | 0.0011 (5) | 0.0026 (5) | 0.0003 (5) |
| N4 | 0.0205 (6) | 0.0236 (7) | 0.0157 (5) | 0.0033 (5) | 0.0007 (4) | 0.0000 (4) |
| C5 | 0.0217 (7) | 0.0253 (8) | 0.0181 (6) | 0.0012 (6) | 0.0036 (5) | −0.0002 (5) |
| C6 | 0.0252 (8) | 0.0287 (8) | 0.0196 (6) | 0.0047 (6) | 0.0030 (5) | −0.0025 (6) |
| C7 | 0.0279 (8) | 0.0237 (8) | 0.0199 (6) | 0.0047 (6) | 0.0024 (5) | −0.0035 (5) |
| C7A | 0.0259 (8) | 0.0192 (7) | 0.0172 (6) | −0.0017 (6) | 0.0012 (5) | −0.0020 (5) |
| N8 | 0.0248 (7) | 0.0265 (7) | 0.0161 (5) | 0.0015 (5) | 0.0024 (5) | −0.0031 (5) |
| C8A | 0.0234 (7) | 0.0213 (7) | 0.0194 (6) | −0.0045 (6) | 0.0005 (5) | −0.0005 (5) |
| C9 | 0.0273 (8) | 0.0294 (9) | 0.0190 (6) | −0.0067 (6) | 0.0003 (5) | 0.0009 (6) |
| C10 | 0.0297 (8) | 0.0283 (8) | 0.0248 (7) | −0.0048 (6) | −0.0066 (6) | 0.0052 (6) |
| C11 | 0.0237 (8) | 0.0237 (8) | 0.0324 (8) | −0.0006 (6) | −0.0033 (6) | 0.0004 (6) |
| C12 | 0.0230 (8) | 0.0232 (8) | 0.0240 (6) | −0.0033 (6) | 0.0000 (5) | −0.0022 (5) |
| C12A | 0.0218 (7) | 0.0181 (7) | 0.0190 (6) | −0.0053 (5) | −0.0010 (5) | −0.0014 (5) |
| C12B | 0.0212 (7) | 0.0182 (7) | 0.0187 (6) | −0.0017 (5) | 0.0004 (5) | −0.0018 (5) |
| C13 | 0.0210 (7) | 0.0226 (8) | 0.0126 (6) | −0.0007 (5) | 0.0015 (5) | 0.0008 (5) |
| C14 | 0.0235 (8) | 0.0254 (8) | 0.0301 (7) | 0.0049 (6) | 0.0051 (6) | −0.0011 (6) |
| C15 | 0.0204 (7) | 0.0219 (7) | 0.0158 (6) | 0.0034 (5) | 0.0006 (5) | 0.0008 (5) |
| C16 | 0.0307 (8) | 0.0338 (9) | 0.0195 (6) | −0.0007 (7) | 0.0004 (6) | −0.0102 (6) |
| C17 | 0.0203 (7) | 0.0265 (8) | 0.0210 (6) | 0.0032 (6) | −0.0011 (5) | 0.0013 (5) |
| C18 | 0.0276 (8) | 0.0320 (9) | 0.0266 (7) | 0.0043 (6) | −0.0001 (6) | 0.0070 (6) |
| O1—C13 | 1.2221 (16) | C7A—N8 | 1.3862 (16) |
| O2—C13 | 1.3426 (17) | N8—C8A | 1.3813 (19) |
| O2—C14 | 1.4558 (17) | N8—H8 | 0.891 (17) |
| O3—C15 | 1.2101 (17) | C8A—C9 | 1.3991 (18) |
| O4—C15 | 1.3431 (17) | C8A—C12A | 1.4198 (19) |
| O4—C16 | 1.4478 (16) | C9—C10 | 1.389 (2) |
| C1—C12B | 1.5077 (18) | C9—H9 | 0.9500 |
| C1—C2 | 1.5292 (18) | C10—C11 | 1.407 (2) |
| C1—H1A | 0.9900 | C10—H10 | 0.9500 |
| C1—H1B | 0.9900 | C11—C12 | 1.3916 (19) |
| C2—C3 | 1.3612 (19) | C11—H11 | 0.9500 |
| C2—C13 | 1.4838 (19) | C12—C12A | 1.406 (2) |
| C3—N4 | 1.4010 (18) | C12—H12 | 0.9500 |
| C3—C15 | 1.5201 (18) | C12A—C12B | 1.4432 (18) |
| N4—C17 | 1.4776 (16) | C14—H14A | 0.9800 |
| N4—C5 | 1.4857 (17) | C14—H14B | 0.9800 |
| C5—C6 | 1.526 (2) | C14—H14C | 0.9800 |
| C5—H5A | 0.9900 | C16—H16A | 0.9800 |
| C5—H5B | 0.9900 | C16—H16B | 0.9800 |
| C6—C7 | 1.537 (2) | C16—H16C | 0.9800 |
| C6—H6A | 0.9900 | C17—C18 | 1.517 (2) |
| C6—H6B | 0.9900 | C17—H17A | 0.9900 |
| C7—C7A | 1.4988 (19) | C17—H17B | 0.9900 |
| C7—H7A | 0.9900 | C18—H18A | 0.9800 |
| C7—H7B | 0.9900 | C18—H18B | 0.9800 |
| C7A—C12B | 1.378 (2) | C18—H18C | 0.9800 |
| C13—O2—C14 | 115.04 (11) | C8A—C9—H9 | 121.3 |
| C15—O4—C16 | 115.27 (11) | C9—C10—C11 | 121.25 (13) |
| C12B—C1—C2 | 117.68 (11) | C9—C10—H10 | 119.4 |
| C12B—C1—H1A | 107.9 | C11—C10—H10 | 119.4 |
| C2—C1—H1A | 107.9 | C12—C11—C10 | 121.14 (14) |
| C12B—C1—H1B | 107.9 | C12—C11—H11 | 119.4 |
| C2—C1—H1B | 107.9 | C10—C11—H11 | 119.4 |
| H1A—C1—H1B | 107.2 | C11—C12—C12A | 119.00 (14) |
| C3—C2—C13 | 117.09 (12) | C11—C12—H12 | 120.5 |
| C3—C2—C1 | 122.54 (13) | C12A—C12—H12 | 120.5 |
| C13—C2—C1 | 120.35 (11) | C12—C12A—C8A | 118.76 (12) |
| C2—C3—N4 | 122.20 (12) | C12—C12A—C12B | 134.28 (13) |
| C2—C3—C15 | 120.48 (12) | C8A—C12A—C12B | 106.96 (12) |
| N4—C3—C15 | 117.29 (11) | C7A—C12B—C12A | 106.86 (11) |
| C3—N4—C17 | 117.81 (11) | C7A—C12B—C1 | 125.23 (12) |
| C3—N4—C5 | 114.73 (11) | C12A—C12B—C1 | 127.89 (13) |
| C17—N4—C5 | 113.00 (11) | O1—C13—O2 | 122.15 (13) |
| N4—C5—C6 | 113.66 (12) | O1—C13—C2 | 123.62 (12) |
| N4—C5—H5A | 108.8 | O2—C13—C2 | 114.19 (12) |
| C6—C5—H5A | 108.8 | O2—C14—H14A | 109.5 |
| N4—C5—H5B | 108.8 | O2—C14—H14B | 109.5 |
| C6—C5—H5B | 108.8 | H14A—C14—H14B | 109.5 |
| H5A—C5—H5B | 107.7 | O2—C14—H14C | 109.5 |
| C5—C6—C7 | 112.73 (12) | H14A—C14—H14C | 109.5 |
| C5—C6—H6A | 109.0 | H14B—C14—H14C | 109.5 |
| C7—C6—H6A | 109.0 | O3—C15—O4 | 124.48 (12) |
| C5—C6—H6B | 109.0 | O3—C15—C3 | 124.24 (12) |
| C7—C6—H6B | 109.0 | O4—C15—C3 | 111.20 (11) |
| H6A—C6—H6B | 107.8 | O4—C16—H16A | 109.5 |
| C7A—C7—C6 | 112.15 (12) | O4—C16—H16B | 109.5 |
| C7A—C7—H7A | 109.2 | H16A—C16—H16B | 109.5 |
| C6—C7—H7A | 109.2 | O4—C16—H16C | 109.5 |
| C7A—C7—H7B | 109.2 | H16A—C16—H16C | 109.5 |
| C6—C7—H7B | 109.2 | H16B—C16—H16C | 109.5 |
| H7A—C7—H7B | 107.9 | N4—C17—C18 | 111.88 (12) |
| C12B—C7A—N8 | 109.40 (12) | N4—C17—H17A | 109.2 |
| C12B—C7A—C7 | 129.87 (12) | C18—C17—H17A | 109.2 |
| N8—C7A—C7 | 120.47 (13) | N4—C17—H17B | 109.2 |
| C8A—N8—C7A | 109.31 (12) | C18—C17—H17B | 109.2 |
| C8A—N8—H8 | 126.1 (10) | H17A—C17—H17B | 107.9 |
| C7A—N8—H8 | 123.8 (10) | C17—C18—H18A | 109.5 |
| N8—C8A—C9 | 130.12 (13) | C17—C18—H18B | 109.5 |
| N8—C8A—C12A | 107.45 (11) | H18A—C18—H18B | 109.5 |
| C9—C8A—C12A | 122.43 (14) | C17—C18—H18C | 109.5 |
| C10—C9—C8A | 117.42 (13) | H18A—C18—H18C | 109.5 |
| C10—C9—H9 | 121.3 | H18B—C18—H18C | 109.5 |
| C12B—C1—C2—C3 | 89.83 (16) | C9—C8A—C12A—C12 | −0.5 (2) |
| C12B—C1—C2—C13 | −91.39 (15) | N8—C8A—C12A—C12B | 0.01 (15) |
| C13—C2—C3—N4 | 161.42 (12) | C9—C8A—C12A—C12B | −179.83 (13) |
| C1—C2—C3—N4 | −19.8 (2) | N8—C7A—C12B—C12A | −1.40 (15) |
| C13—C2—C3—C15 | −16.67 (18) | C7—C7A—C12B—C12A | −175.38 (14) |
| C1—C2—C3—C15 | 162.15 (12) | N8—C7A—C12B—C1 | 177.49 (12) |
| C2—C3—N4—C17 | 152.39 (13) | C7—C7A—C12B—C1 | 3.5 (2) |
| C15—C3—N4—C17 | −29.46 (17) | C12—C12A—C12B—C7A | −178.33 (15) |
| C2—C3—N4—C5 | −70.79 (17) | C8A—C12A—C12B—C7A | 0.85 (15) |
| C15—C3—N4—C5 | 107.36 (13) | C12—C12A—C12B—C1 | 2.8 (3) |
| C3—N4—C5—C6 | 141.33 (12) | C8A—C12A—C12B—C1 | −178.00 (13) |
| C17—N4—C5—C6 | −79.77 (14) | C2—C1—C12B—C7A | −96.28 (16) |
| N4—C5—C6—C7 | −59.93 (15) | C2—C1—C12B—C12A | 82.37 (18) |
| C5—C6—C7—C7A | −53.56 (15) | C14—O2—C13—O1 | −2.25 (17) |
| C6—C7—C7A—C12B | 91.06 (18) | C14—O2—C13—C2 | 175.79 (10) |
| C6—C7—C7A—N8 | −82.35 (15) | C3—C2—C13—O1 | −21.88 (18) |
| C12B—C7A—N8—C8A | 1.44 (16) | C1—C2—C13—O1 | 159.27 (12) |
| C7—C7A—N8—C8A | 176.09 (12) | C3—C2—C13—O2 | 160.11 (11) |
| C7A—N8—C8A—C9 | 178.94 (14) | C1—C2—C13—O2 | −18.73 (16) |
| C7A—N8—C8A—C12A | −0.87 (15) | C16—O4—C15—O3 | −9.14 (18) |
| N8—C8A—C9—C10 | −179.83 (14) | C16—O4—C15—C3 | 174.08 (11) |
| C12A—C8A—C9—C10 | 0.0 (2) | C2—C3—C15—O3 | 124.43 (15) |
| C8A—C9—C10—C11 | 0.6 (2) | N4—C3—C15—O3 | −53.76 (18) |
| C9—C10—C11—C12 | −0.6 (2) | C2—C3—C15—O4 | −58.78 (16) |
| C10—C11—C12—C12A | 0.1 (2) | N4—C3—C15—O4 | 123.03 (12) |
| C11—C12—C12A—C8A | 0.5 (2) | C3—N4—C17—C18 | −62.97 (17) |
| C11—C12—C12A—C12B | 179.58 (15) | C5—N4—C17—C18 | 159.50 (12) |
| N8—C8A—C12A—C12 | 179.34 (12) |
| H··· | ||||
| N8—H8···O1i | 0.891 (17) | 2.234 (18) | 3.0690 (18) | 155.7 (14) |
| N8—H8···O3i | 0.891 (17) | 2.546 (16) | 3.1029 (16) | 121.2 (12) |