| Literature DB >> 28316802 |
Cristian Paz1, Leandro Ortiz2, Uwe Schilde3.
Abstract
The title compound, erioflorin, C19H24O6 [systematic name: (1aR,3S,4Z,5aR,8aR,9R,10aR)-1a,2,3,5a,7,8,8a,9,10,10a-deca-hydro-3-hy-droxy-4,10a-dimethyl-8-methyl-idene-7-oxooxireno[5,6]cyclo-deca-[1,2-b]furan-9-yl methacrylate], is a tricyclic germacrane sesquiterpene lactone, which was isolated from Podanthus mitiqui (L.). The compound crystallizes in the space group P212121, and its mol-ecular structure consists of a methacrylic ester of a ten-membered ring sesquiterpenoid annelated with an epoxide and a butyrolactone. The structure is stabilized by one intramolecular C-H⋯O hydrogen bond. An O-H⋯O hydrogen bond and further C-H⋯O interactions can be observed in the packing.Entities:
Keywords: Podanthus mitiqui; crystal structure; germacrane sesquiterpene lactone
Year: 2017 PMID: 28316802 PMCID: PMC5347047 DOI: 10.1107/S2056989017001700
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of erioflorin with the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. H atoms are shown as small spheres of arbitrary radius and hydrogen bonds as blue dashed lines.
Figure 2Part of the crystal structure of erioflorin, with hydrogen bonds shown as blue dashed lines. The view is along the a axis.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C1—H1⋯O1i | 0.99 | 2.47 | 3.456 (4) | 173 |
| C6—H6⋯O2 | 0.99 | 2.22 | 2.954 (4) | 130 |
| C7—H7⋯O1i | 0.99 | 2.38 | 3.341 (4) | 164 |
| O2—H2⋯O4ii | 0.85 (5) | 1.90 (5) | 2.750 (4) | 176 (5) |
| C13—H13 | 0.94 | 2.57 | 3.493 (5) | 167 |
Symmetry codes: (i) ; (ii) ; (iii) .
Experimental details
| Crystal data | |
| Chemical formula | C19H24O6 |
|
| 348.38 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 210 |
|
| 8.4709 (3), 9.8287 (3), 22.4299 (6) |
|
| 1867.47 (10) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 1.02 × 0.19 × 0.06 |
| Data collection | |
| Diffractometer | Stoe |
| Absorption correction | Integration ( |
|
| 0.585, 0.825 |
| No. of measured, independent and observed [ | 24317, 3307, 2968 |
|
| 0.105 |
| (sin θ/λ)max (Å−1) | 0.596 |
| Refinement | |
|
| 0.045, 0.116, 1.09 |
| No. of reflections | 3307 |
| No. of parameters | 233 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.22, −0.18 |
Computer programs: X-AREA and X-RED (Stoe & Cie, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2016 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and publCIF (Westrip, 2010 ▸).
| C19H24O6 | |
| Melting point = 498–499 K | |
| Orthorhombic, | Mo |
| Cell parameters from 28996 reflections | |
| θ = 1.8–25.0° | |
| µ = 0.09 mm−1 | |
| Needle, colourless | |
| 1.02 × 0.19 × 0.06 mm |
| Stoe IPDS 2 diffractometer | 3307 independent reflections |
| Radiation source: sealed X-ray tube | 2968 reflections with |
| Detector resolution: 6.67 pixels mm-1 | |
| rotation method scans | θmax = 25.1°, θmin = 1.8° |
| Absorption correction: integration (X-RED; Stoe & Cie, 2011) | |
| 24317 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3307 reflections | Δρmax = 0.22 e Å−3 |
| 233 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.019 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 1.2718 (4) | 0.7223 (3) | 0.94856 (14) | 0.0455 (7) | |
| H1 | 1.1651 | 0.7406 | 0.9646 | 0.055* | |
| C2 | 1.2836 (5) | 0.5963 (4) | 0.91111 (17) | 0.0560 (9) | |
| H2A | 1.2413 | 0.5195 | 0.9340 | 0.067* | |
| H2B | 1.3954 | 0.5777 | 0.9034 | 0.067* | |
| C3 | 1.1965 (4) | 0.6038 (3) | 0.85131 (15) | 0.0486 (8) | |
| H3 | 1.1997 | 0.5119 | 0.8334 | 0.058* | |
| C4 | 1.0244 (4) | 0.6422 (3) | 0.85906 (14) | 0.0443 (7) | |
| C5 | 0.9680 (3) | 0.7678 (3) | 0.86197 (14) | 0.0417 (7) | |
| H5 | 0.8582 | 0.7760 | 0.8670 | 0.050* | |
| C6 | 1.0579 (3) | 0.8971 (3) | 0.85813 (13) | 0.0383 (6) | |
| H6 | 1.1702 | 0.8782 | 0.8491 | 0.046* | |
| C7 | 1.0446 (3) | 0.9878 (3) | 0.91481 (13) | 0.0366 (6) | |
| H7 | 1.0075 | 0.9325 | 0.9489 | 0.044* | |
| C8 | 1.1992 (4) | 1.0598 (3) | 0.93117 (13) | 0.0416 (7) | |
| H8 | 1.1719 | 1.1426 | 0.9541 | 0.050* | |
| C9 | 1.3134 (4) | 0.9765 (4) | 0.96848 (14) | 0.0480 (8) | |
| H9A | 1.4052 | 1.0339 | 0.9771 | 0.058* | |
| H9B | 1.2620 | 0.9568 | 1.0066 | 0.058* | |
| C10 | 1.3734 (4) | 0.8436 (4) | 0.94334 (15) | 0.0460 (8) | |
| C11 | 0.9193 (4) | 1.0888 (3) | 0.89732 (14) | 0.0421 (7) | |
| C12 | 0.9029 (4) | 1.0827 (4) | 0.83196 (15) | 0.0509 (8) | |
| C13 | 0.8339 (4) | 1.1686 (4) | 0.93126 (18) | 0.0557 (9) | |
| H13A | 0.7575 | 1.2258 | 0.9141 | 0.067* | |
| H13B | 0.8491 | 1.1686 | 0.9728 | 0.067* | |
| C14 | 0.9170 (5) | 0.5216 (4) | 0.86532 (19) | 0.0637 (10) | |
| H14A | 0.9229 | 0.4664 | 0.8295 | 0.095* | |
| H14B | 0.8094 | 0.5527 | 0.8710 | 0.095* | |
| H14C | 0.9494 | 0.4678 | 0.8994 | 0.095* | |
| C15 | 1.5071 (4) | 0.8528 (5) | 0.89945 (19) | 0.0625 (10) | |
| H15A | 1.5415 | 0.7620 | 0.8887 | 0.094* | |
| H15B | 1.5943 | 0.9021 | 0.9173 | 0.094* | |
| H15C | 1.4717 | 0.9005 | 0.8640 | 0.094* | |
| C16 | 1.3628 (4) | 1.2116 (3) | 0.87355 (16) | 0.0461 (7) | |
| C17 | 1.4187 (5) | 1.2424 (4) | 0.81157 (19) | 0.0636 (10) | |
| C18 | 1.5204 (4) | 1.3623 (4) | 0.8052 (2) | 0.0637 (10) | |
| H18A | 1.5912 | 1.3680 | 0.8391 | 0.096* | |
| H18B | 1.4555 | 1.4436 | 0.8036 | 0.096* | |
| H18C | 1.5815 | 1.3548 | 0.7688 | 0.096* | |
| C19 | 1.3174 (7) | 1.2043 (6) | 0.76391 (19) | 0.0893 (16) | |
| H19A | 1.3158 | 1.2558 | 0.7286 | 0.107* | |
| H19B | 1.2519 | 1.1275 | 0.7677 | 0.107* | |
| O1 | 1.3989 (3) | 0.7432 (3) | 0.99078 (11) | 0.0602 (7) | |
| O2 | 1.2835 (3) | 0.6918 (3) | 0.81346 (11) | 0.0502 (6) | |
| H2 | 1.245 (5) | 0.681 (5) | 0.779 (2) | 0.075* | |
| O3 | 0.9867 (3) | 0.9803 (2) | 0.80995 (9) | 0.0466 (6) | |
| O4 | 0.8276 (4) | 1.1601 (3) | 0.80088 (13) | 0.0800 (10) | |
| O5 | 1.2672 (3) | 1.1032 (2) | 0.87473 (10) | 0.0472 (6) | |
| O6 | 1.4016 (4) | 1.2734 (3) | 0.91723 (13) | 0.0680 (8) |
| C1 | 0.0439 (16) | 0.0556 (19) | 0.0370 (15) | 0.0101 (15) | −0.0056 (13) | 0.0065 (14) |
| C2 | 0.060 (2) | 0.0514 (18) | 0.057 (2) | 0.0157 (18) | −0.0042 (17) | 0.0038 (17) |
| C3 | 0.0514 (18) | 0.0456 (16) | 0.0488 (19) | 0.0022 (15) | 0.0046 (15) | −0.0048 (15) |
| C4 | 0.0465 (16) | 0.0476 (17) | 0.0389 (16) | −0.0089 (14) | 0.0022 (14) | −0.0047 (14) |
| C5 | 0.0334 (13) | 0.0507 (17) | 0.0411 (16) | −0.0036 (13) | 0.0012 (12) | −0.0064 (15) |
| C6 | 0.0364 (14) | 0.0408 (15) | 0.0377 (15) | 0.0020 (12) | −0.0030 (12) | 0.0026 (13) |
| C7 | 0.0344 (14) | 0.0395 (15) | 0.0358 (14) | 0.0005 (12) | 0.0007 (11) | 0.0006 (12) |
| C8 | 0.0416 (16) | 0.0474 (16) | 0.0358 (15) | −0.0056 (14) | −0.0033 (12) | −0.0008 (13) |
| C9 | 0.0445 (17) | 0.061 (2) | 0.0380 (15) | −0.0040 (16) | −0.0091 (13) | −0.0004 (15) |
| C10 | 0.0368 (16) | 0.061 (2) | 0.0407 (17) | 0.0054 (14) | −0.0096 (13) | 0.0035 (14) |
| C11 | 0.0431 (17) | 0.0443 (16) | 0.0389 (15) | 0.0035 (14) | −0.0012 (13) | 0.0028 (13) |
| C12 | 0.0521 (19) | 0.059 (2) | 0.0420 (17) | 0.0135 (17) | −0.0024 (14) | 0.0072 (16) |
| C13 | 0.056 (2) | 0.057 (2) | 0.055 (2) | 0.0140 (17) | 0.0025 (16) | 0.0002 (17) |
| C14 | 0.072 (2) | 0.056 (2) | 0.063 (2) | −0.0208 (19) | 0.0096 (19) | −0.0086 (19) |
| C15 | 0.0373 (18) | 0.085 (3) | 0.065 (2) | −0.0032 (18) | 0.0051 (16) | −0.003 (2) |
| C16 | 0.0453 (17) | 0.0383 (15) | 0.0547 (19) | −0.0019 (13) | −0.0024 (14) | −0.0011 (16) |
| C17 | 0.064 (2) | 0.065 (2) | 0.063 (2) | −0.019 (2) | 0.0036 (18) | 0.013 (2) |
| C18 | 0.049 (2) | 0.057 (2) | 0.085 (3) | 0.0022 (17) | 0.014 (2) | 0.000 (2) |
| C19 | 0.110 (4) | 0.114 (4) | 0.045 (2) | −0.046 (3) | 0.005 (2) | 0.005 (2) |
| O1 | 0.0578 (14) | 0.0738 (16) | 0.0491 (14) | 0.0128 (13) | −0.0181 (11) | 0.0102 (12) |
| O2 | 0.0420 (12) | 0.0630 (14) | 0.0458 (12) | 0.0000 (11) | 0.0056 (10) | −0.0082 (11) |
| O3 | 0.0506 (12) | 0.0543 (13) | 0.0349 (11) | 0.0070 (11) | −0.0031 (9) | 0.0019 (10) |
| O4 | 0.090 (2) | 0.097 (2) | 0.0535 (16) | 0.0422 (18) | −0.0130 (15) | 0.0130 (16) |
| O5 | 0.0506 (13) | 0.0508 (12) | 0.0402 (11) | −0.0137 (11) | −0.0016 (9) | 0.0038 (10) |
| O6 | 0.0806 (18) | 0.0558 (14) | 0.0675 (17) | −0.0177 (14) | 0.0062 (14) | −0.0152 (14) |
| C1—O1 | 1.449 (4) | C10—O1 | 1.467 (4) |
| C1—C10 | 1.475 (5) | C10—C15 | 1.503 (5) |
| C1—C2 | 1.499 (5) | C11—C13 | 1.311 (5) |
| C1—H1 | 0.9900 | C11—C12 | 1.474 (5) |
| C2—C3 | 1.532 (5) | C12—O4 | 1.213 (4) |
| C2—H2A | 0.9800 | C12—O3 | 1.327 (4) |
| C2—H2B | 0.9800 | C13—H13A | 0.9400 |
| C3—O2 | 1.418 (4) | C13—H13B | 0.9400 |
| C3—C4 | 1.516 (5) | C14—H14A | 0.9700 |
| C3—H3 | 0.9900 | C14—H14B | 0.9700 |
| C4—C5 | 1.326 (4) | C14—H14C | 0.9700 |
| C4—C14 | 1.501 (5) | C15—H15A | 0.9700 |
| C5—C6 | 1.484 (4) | C15—H15B | 0.9700 |
| C5—H5 | 0.9400 | C15—H15C | 0.9700 |
| C6—O3 | 1.483 (3) | C16—O6 | 1.199 (4) |
| C6—C7 | 1.557 (4) | C16—O5 | 1.338 (4) |
| C6—H6 | 0.9900 | C16—C17 | 1.499 (5) |
| C7—C11 | 1.505 (4) | C17—C19 | 1.421 (6) |
| C7—C8 | 1.533 (4) | C17—C18 | 1.467 (5) |
| C7—H7 | 0.9900 | C18—H18A | 0.9700 |
| C8—O5 | 1.455 (4) | C18—H18B | 0.9700 |
| C8—C9 | 1.519 (4) | C18—H18C | 0.9700 |
| C8—H8 | 0.9900 | C19—H19A | 0.9400 |
| C9—C10 | 1.511 (5) | C19—H19B | 0.9400 |
| C9—H9A | 0.9800 | O2—H2 | 0.85 (5) |
| C9—H9B | 0.9800 | ||
| O1—C1—C10 | 60.2 (2) | H9A—C9—H9B | 107.1 |
| O1—C1—C2 | 115.7 (3) | O1—C10—C1 | 59.0 (2) |
| C10—C1—C2 | 125.7 (3) | O1—C10—C15 | 113.9 (3) |
| O1—C1—H1 | 114.5 | C1—C10—C15 | 122.7 (3) |
| C10—C1—H1 | 114.5 | O1—C10—C9 | 111.1 (3) |
| C2—C1—H1 | 114.5 | C1—C10—C9 | 118.2 (3) |
| C1—C2—C3 | 114.7 (3) | C15—C10—C9 | 116.4 (3) |
| C1—C2—H2A | 108.6 | C13—C11—C12 | 123.3 (3) |
| C3—C2—H2A | 108.6 | C13—C11—C7 | 129.2 (3) |
| C1—C2—H2B | 108.6 | C12—C11—C7 | 107.4 (3) |
| C3—C2—H2B | 108.6 | O4—C12—O3 | 122.9 (3) |
| H2A—C2—H2B | 107.6 | O4—C12—C11 | 126.6 (3) |
| O2—C3—C4 | 114.6 (3) | O3—C12—C11 | 110.5 (3) |
| O2—C3—C2 | 107.6 (3) | C11—C13—H13A | 120.0 |
| C4—C3—C2 | 112.0 (3) | C11—C13—H13B | 120.0 |
| O2—C3—H3 | 107.4 | H13A—C13—H13B | 120.0 |
| C4—C3—H3 | 107.4 | C4—C14—H14A | 109.5 |
| C2—C3—H3 | 107.4 | C4—C14—H14B | 109.5 |
| C5—C4—C14 | 120.8 (3) | H14A—C14—H14B | 109.5 |
| C5—C4—C3 | 125.7 (3) | C4—C14—H14C | 109.5 |
| C14—C4—C3 | 113.4 (3) | H14A—C14—H14C | 109.5 |
| C4—C5—C6 | 127.5 (3) | H14B—C14—H14C | 109.5 |
| C4—C5—H5 | 116.2 | C10—C15—H15A | 109.5 |
| C6—C5—H5 | 116.2 | C10—C15—H15B | 109.5 |
| O3—C6—C5 | 107.8 (2) | H15A—C15—H15B | 109.5 |
| O3—C6—C7 | 104.5 (2) | C10—C15—H15C | 109.5 |
| C5—C6—C7 | 113.9 (2) | H15A—C15—H15C | 109.5 |
| O3—C6—H6 | 110.2 | H15B—C15—H15C | 109.5 |
| C5—C6—H6 | 110.2 | O6—C16—O5 | 123.6 (3) |
| C7—C6—H6 | 110.2 | O6—C16—C17 | 124.7 (3) |
| C11—C7—C8 | 111.1 (2) | O5—C16—C17 | 111.7 (3) |
| C11—C7—C6 | 102.5 (2) | C19—C17—C18 | 119.6 (4) |
| C8—C7—C6 | 113.4 (2) | C19—C17—C16 | 117.0 (3) |
| C11—C7—H7 | 109.9 | C18—C17—C16 | 115.9 (4) |
| C8—C7—H7 | 109.9 | C17—C18—H18A | 109.5 |
| C6—C7—H7 | 109.9 | C17—C18—H18B | 109.5 |
| O5—C8—C9 | 112.6 (3) | H18A—C18—H18B | 109.5 |
| O5—C8—C7 | 105.4 (2) | C17—C18—H18C | 109.5 |
| C9—C8—C7 | 115.3 (3) | H18A—C18—H18C | 109.5 |
| O5—C8—H8 | 107.7 | H18B—C18—H18C | 109.5 |
| C9—C8—H8 | 107.7 | C17—C19—H19A | 120.0 |
| C7—C8—H8 | 107.7 | C17—C19—H19B | 120.0 |
| C10—C9—C8 | 118.3 (3) | H19A—C19—H19B | 120.0 |
| C10—C9—H9A | 107.7 | C1—O1—C10 | 60.8 (2) |
| C8—C9—H9A | 107.7 | C3—O2—H2 | 106 (3) |
| C10—C9—H9B | 107.7 | C12—O3—C6 | 111.4 (2) |
| C8—C9—H9B | 107.7 | C16—O5—C8 | 119.4 (2) |
| O1—C1—C2—C3 | −155.0 (3) | C8—C9—C10—O1 | −146.5 (3) |
| C10—C1—C2—C3 | −84.4 (4) | C8—C9—C10—C1 | −81.3 (4) |
| C1—C2—C3—O2 | 72.5 (4) | C8—C9—C10—C15 | 80.9 (4) |
| C1—C2—C3—C4 | −54.4 (4) | C8—C7—C11—C13 | −76.3 (4) |
| O2—C3—C4—C5 | −36.3 (5) | C6—C7—C11—C13 | 162.3 (4) |
| C2—C3—C4—C5 | 86.7 (4) | C8—C7—C11—C12 | 104.9 (3) |
| O2—C3—C4—C14 | 145.4 (3) | C6—C7—C11—C12 | −16.5 (3) |
| C2—C3—C4—C14 | −91.6 (4) | C13—C11—C12—O4 | 10.6 (7) |
| C14—C4—C5—C6 | 178.4 (3) | C7—C11—C12—O4 | −170.5 (4) |
| C3—C4—C5—C6 | 0.3 (6) | C13—C11—C12—O3 | −170.9 (3) |
| C4—C5—C6—O3 | 125.5 (3) | C7—C11—C12—O3 | 7.9 (4) |
| C4—C5—C6—C7 | −119.1 (4) | O6—C16—C17—C19 | −153.5 (5) |
| O3—C6—C7—C11 | 19.0 (3) | O5—C16—C17—C19 | 28.4 (5) |
| C5—C6—C7—C11 | −98.4 (3) | O6—C16—C17—C18 | −3.8 (6) |
| O3—C6—C7—C8 | −100.9 (3) | O5—C16—C17—C18 | 178.1 (3) |
| C5—C6—C7—C8 | 141.8 (3) | C2—C1—O1—C10 | 118.1 (3) |
| C11—C7—C8—O5 | −74.8 (3) | C15—C10—O1—C1 | −115.1 (3) |
| C6—C7—C8—O5 | 40.0 (3) | C9—C10—O1—C1 | 111.1 (3) |
| C11—C7—C8—C9 | 160.4 (3) | O4—C12—O3—C6 | −176.3 (4) |
| C6—C7—C8—C9 | −84.8 (3) | C11—C12—O3—C6 | 5.2 (4) |
| O5—C8—C9—C10 | −61.5 (4) | C5—C6—O3—C12 | 105.8 (3) |
| C7—C8—C9—C10 | 59.5 (4) | C7—C6—O3—C12 | −15.7 (3) |
| C2—C1—C10—O1 | −101.8 (3) | O6—C16—O5—C8 | 3.0 (5) |
| O1—C1—C10—C15 | 100.1 (3) | C17—C16—O5—C8 | −178.9 (3) |
| C2—C1—C10—C15 | −1.7 (5) | C9—C8—O5—C16 | −80.4 (3) |
| O1—C1—C10—C9 | −98.9 (3) | C7—C8—O5—C16 | 153.1 (3) |
| C2—C1—C10—C9 | 159.3 (3) |
| H··· | ||||
| C1—H1···O1i | 0.99 | 2.47 | 3.456 (4) | 173 |
| C6—H6···O2 | 0.99 | 2.22 | 2.954 (4) | 130 |
| C7—H7···O1i | 0.99 | 2.38 | 3.341 (4) | 164 |
| O2—H2···O4ii | 0.85 (5) | 1.90 (5) | 2.750 (4) | 176 (5) |
| C13—H13 | 0.94 | 2.57 | 3.493 (5) | 167 |