| Literature DB >> 28316631 |
Ken Kikuchi1, Mari Matsuda2, Shigekazu Iguchi3, Tomonori Mizutani2, Keiichi Hiramatsu2, Michiru Tega-Ishii4, Kaori Sansaka4, Kenta Negishi4, Kimie Shimada4, Jun Umemura4, Shigeyuki Notake5, Hideji Yanagisawa5, Hiroshi Takahashi6, Reiko Yabusaki7, Hideki Araoka7, Akiko Yoneyama7.
Abstract
Background. Early detection of Gram-positive bacteremia and timely appropriate antimicrobial therapy are required for decreasing patient mortality. The purpose of our study was to evaluate the performance of the Verigene Gram-positive blood culture assay (BC-GP) in two special healthcare settings and determine the potential impact of rapid blood culture testing for Gram-positive bacteremia within the Japanese healthcare delivery system. Furthermore, the study included simulated blood cultures, which included a library of well-characterized methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant enterococci (VRE) isolates reflecting different geographical regions in Japan. Methods. A total 347 BC-GP assays were performed on clinical and simulated blood cultures. BC-GP results were compared to results obtained by reference methods for genus/species identification and detection of resistance genes using molecular and MALDI-TOF MS methodologies. Results. For identification and detection of resistance genes at two clinical sites and simulated blood cultures, overall concordance of BC-GP with reference methods was 327/347 (94%). The time for identification and antimicrobial resistance detection by BC-GP was significantly shorter compared to routine testing especially at the cardiology hospital, which does not offer clinical microbiology services on weekends and holidays. Conclusion. BC-GP generated accurate identification and detection of resistance markers compared with routine laboratory methods for Gram-positive organisms in specialized clinical settings providing more rapid results than current routine testing.Entities:
Year: 2017 PMID: 28316631 PMCID: PMC5337849 DOI: 10.1155/2017/4896791
Source DB: PubMed Journal: Can J Infect Dis Med Microbiol ISSN: 1712-9532 Impact factor: 2.471
Performance of the BC-GP assay at Toranomon Hospital.
| Organism | BC-GP (total) | BC-GP (monomicrobial cultures) | ||||||
|---|---|---|---|---|---|---|---|---|
| Number of organisms | Number (%) of isolates | Number of organisms | Number (%) of isolates | |||||
| Correctly identified | Not detected | Incorrectly identified | Correctly identified | Not detected | Incorrectly identified | |||
|
| 78 | 73 (94) | 4 (5) | 1 (1) | 71 | 70 (99) | 1 (2) | |
| | 16 | 16 (100) | 16 | 16 (100) | ||||
| Methicillin-sensitive | 9 | 9 (100) | 9 | 9 (100) | ||||
| Methicillin-resistant | 7 | 7 (100) | 7 | 7 (100) | ||||
| | 37 | 34 (92) | 2 (5) | 1 (3) | 34 | 34 (100) | ||
| Methicillin-sensitive | 2 | 1 (50) | 1 (50)a | 1 | 1 (100) | |||
| Methicillin-resistant | 35 | 33 (94) | 1 (3)b | 1 (3)c | 33 | 33 (100) | ||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| Other CNS | 24 | 22 (92) | 2 (8) | 20 | 19 (95) | 1 (6) | ||
| | 9 | 8 (89) | 1 (11) | 7 | 6 (67) | 1 (33) | ||
| | 8 | 8 (100) | 7 | 7 (100) | ||||
| | 4 | 3 (75) | 1 (25)d | 3 | 3 (100) | |||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
|
| ||||||||
|
| 9 | 7 (78) | 1 (11) | 1 (11) | 6 | 5 (83) | 1 (27) | |
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 1 | 1 (100) | ||||||
| | 1 | 1 (100)e | ||||||
| Other streptococci | 7 | 5 (72) | 1 (14) | 1 (14) | 5 | 4 (80) | ||
| | 2 | 1 (50) | 1 (50)f | 2 | 1 (50) | 1 (50)f | ||
| | 2 | 1 (50) | 1 (50)g | 1 | 1 (100) | |||
| | 2 | 2 (100) | 1 | 1 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
|
| ||||||||
|
| 17 | 16 (94) | 1 (6) | 16 | 16 (100) | |||
| | 2 | 1 (50) | 1 (50)h | 1 | 1 (100) | |||
| Vancomycin-sensitive | 2 | 1 (50) | 1 (50) | 1 | 1 (100) | |||
| | 15 | 15 (100) | 15 | 15 (100) | ||||
| Vancomycin-sensitive | 15 | 15 (100) | 15 | 15 (100) | ||||
|
| ||||||||
| Total | 104 | 96 (92) | 6 (6) | 2 (2) | 93 | 91 (98) | 1 (1) | 1 (1) |
|
| ||||||||
| Other nontarget Gram-positives | 15 | 10 | ||||||
| | 3 | 2 | ||||||
| | 2 | 1 | ||||||
| | 1 | 1 | ||||||
| | 12 | 8 | ||||||
| | 9 | 5 | ||||||
| | 3 | 3 | ||||||
|
| ||||||||
| Total isolates | 119 | 103 | ||||||
aPolymicrobial culture of methicillin-sensitive and methicillin-resistant S. epidermidis.
bPolymicrobial culture with E. faecium.
cCorrectly identified as Staphylococcus, but not as S. epidermidis, S. aureus, or S. lugdunensis.
dPolymicrobial culture with S. tigurinus.
e“S. anginosus group” identified by the BC-GP assay is defined as “correctly identified” for each species.
fIdentified as S. pneumoniae.
gPolymicrobial culture with methicillin-resistant S. epidermidis.
hPolymicrobial culture with Escherichia coli.
Performance of the BC-GP assay at Sakakibara Heart Institute.
| Organism | BC-GP (total) | BC-GP (monomicrobial cultures) | ||||||
|---|---|---|---|---|---|---|---|---|
| Number of organisms | Number (%) of isolates | Number of organisms | Number (%) of isolates | |||||
| Correctly identified | Not detected | Incorrectly identified | Correctly identified | Not detected | Incorrectly identified | |||
|
| 24 | 24 (100) | 22 | 22 (100) | ||||
| | 7 | 7 (100) | 7 | 7 (100) | ||||
| Methicillin-sensitive | 6 | 6 (100) | 6 | 6 (100) | ||||
| Methicillin-resistant | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 12 | 12 (100) | 11 | 11 (100) | ||||
| Methicillin-sensitive | 2 | 2 (100) | 2 | 2 (100) | ||||
| Methicillin-resistant | 10 | 10 (100) | 9 | 9 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| Other CNS | 4 | 4 (100) | 3 | 3 (100) | ||||
| | 2 | 2 (100) | 2 | 2 (100) | ||||
| | 1 | 1 (100) | ||||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
|
| ||||||||
|
| 8 | 8 (100) | 8 | 7 (87) | 1 (13)b | |||
| | 1 | 0 (0) | 1 (100)a | 1 | 0 (0) | 1 (100)b | ||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 2 | 2 (100) | 2 | 2 (100) | ||||
| | 2 | 2 (100)b | 2 | 2 (100)c | ||||
| Other streptococci | 4 | 4 (100) | 4 | 4 (100) | ||||
| | 2 | 2 (100) | 2 | 2 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
| | 1 | 1 (100) | 1 | 1 (100) | ||||
|
| 2 | 1 (50) | 1 (50) | |||||
| | 1 | 0 (0) | 1 (100)c | |||||
| Vancomycin-sensitive | 1 | 0 (0) | 1 (100)c | |||||
| | 1 | 1 (100) | ||||||
| Vancomycin-sensitive | 1 | 1 (100) | ||||||
|
| ||||||||
|
| 1 | 1 (100) | 1 | 1 (100) | ||||
|
| ||||||||
| Total | 35 | 33 (94) | 1 (3) | 1 (3) | 31 | 30 (97) | 1 (3) | |
|
| ||||||||
| Other nontarget Gram-positives | 1 | 1 | ||||||
| | 1 | 1 | ||||||
|
| ||||||||
| Total isolates | 36 | 32 | ||||||
aIdentified to the genus level, but not to the species level.
b“S. anginosus group” identified by the BC-GP assay is defined as “correctly identified” for each species.
cPolymicrobial culture with S. epidermidis.
Difference in time to final identification and antimicrobial susceptibility report.
| Organism | Sakakibara Heart Institute | Toranomon Hospital | ||
|---|---|---|---|---|
| Mean (h) | Range | Mean (h) | Range | |
|
| 34.5 ( | 21.5–46.8 | 28.2 ( | 19.6–47.0 |
|
| 80.7 ( | 23.9–160.9 | 38.3 ( | 21.6–72.5 |
| Coagulase-negative staphylococci | 121.1 ( | 25.9–217.4 | 51.4 ( | 21.4–72.2 |
|
| 156.6 ( | 95.9–217.4 | 33.6 ( | 23.4–47.7 |
|
| 196.6 ( | 42.3–502.6 | 51.0 ( | 23.4–69.2 |
aThe difference in time between BC-GP result and final culture-based identification and susceptibility results.
Detection of Gram-positive bacteria and resistance genes in simulated blood cultures by BC-GP.
| Organism | Total no. of strains | No. (%) of isolates | ||
|---|---|---|---|---|
| correctly identified | not detected | incorrectly identified | ||
|
| 54 | 54 (100) | ||
| | 35 | 35 (100) | ||
| Methicillin-sensitive, | 15 | 15 (100) | ||
| Methicillin-resistant, | 20 | 20 (100) | ||
| Health-care associated | 10 | 10 (100) | ||
| Community acquired | 10 | 10 (100) | ||
|
| ||||
| | 1 | 1 (100) | ||
| Methicillin-sensitive, | 1 | 1 (100) | ||
|
| ||||
| | 8 | 8 (100) | ||
|
| ||||
| Other CNS | 10 | 10 (100) | ||
| | 2 | 2 (100) | ||
| | 2 | 2 (100) | ||
| | 2 | 2 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
|
| ||||
|
| 87 | 77 (88) | 4 (5) | 6 (7) |
| | 9 | 8 (89) | 1 (11)a | |
| | 8 | 8 (100) | ||
| | 8 | 8 (100) | ||
| | 10 | 8 (80) | 2 (20) | |
| | 3 | 2 (66) | 1 (34)c | |
| | 4 | 3 (75) | 1 (25)c | |
| | 3 | 3 (100) | ||
| | 22 | 20 (91) | 2 (9)d | |
| Other streptococci | 30 | 25 (86) | 3 (10) | 2 (7) |
| | 12 | 9 (75) | 1 (8) | 2 (17)e |
| | 4 | 4 (100) | ||
| | 2 | 2 (100) | ||
| | 2 | 1 (50) | 1 (50) | |
| | 1 | 0 (0) | 1 (100) | |
| | 1 | 1 (100) | ∖ | |
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
| | 1 | 1 (100) | ||
|
| ||||
|
| 57 | 57 (100) | ||
| | 32 | 32 (100) | ||
| Vancomycin-sensitive | 18 | 18 (100) | ||
| Vancomycin-resistant, | 4 | 4 (100) | ||
| Vancomycin-resistant, | 10 | 10 (100) | ||
| | 25 | 25 (100) | ||
| Vancomycin-sensitive | 5 | 5 (100) | ||
| Vancomycin-resistant, | 10 | 10 (100) | ||
| Vancomycin-resistant, | 10 | 10 (100) | ||
|
| ||||
|
| 5 | 5 (100) | ||
|
| ||||
|
| 5 | 5 (100) | ||
|
| ||||
| Total | 208 | 198 (95) | 4 (2) | 6 (3) |
aNot detected initially, but positive using 11-fold diluted blood culture sample.
b Streptococcus sp. belonging to the S. anginosus group is identified as S. anginosus group by BC-GP.
cPositive signal for Streptococcus, but no signal for S. anginosus group.
dPositive signal for Streptococcus, but no signal for S. pneumoniae.
eMisidentified as S. pneumoniae.