| Literature DB >> 28304295 |
Gurdeep Marwarha, Stephen Rostad, Jaclyn Lilek, Mason Kleinjan, Jared Schommer, Othman Ghribi.
Abstract
Epidemiological studies implicate diets rich inEntities:
Keywords: Alzheimer’s disease; C/EBP homologous protein; amyloid-β; endoplasmic reticulum stress; palmitic acid; saturated free fatty zzm321990acids; β-site AβPP cleaving enzyme 1
Mesh:
Substances:
Year: 2017 PMID: 28304295 PMCID: PMC5389045 DOI: 10.3233/JAD-161130
Source DB: PubMed Journal: J Alzheimers Dis ISSN: 1387-2877 Impact factor: 4.472
List of siRNA and their target sequences used for RNA interference
| Species | Gene | mRNA | RNA | RefSeq | siRNA |
| ID | target | interference | location | ||
| Human | 1649 | siRNA | NM_001195053 | 817 | |
| Human | 1649 | siRNA | NM_001195054 | 764 | |
| Human | 1649 | siRNA | NM_001195055 | 741 | |
| Human | 1649 | siRNA | NM_001195056 | 927 | |
| Human | 1649 | siRNA | NM_001195057 | 646 | |
| Human | 1649 | siRNA | NM_004083 | 660 | |
| Mouse | 12607 | siRNA | NM_001024806.1 | 272 | |
| Mouse | 12607 | siRNA | NM_001024806.2 | 292 | |
| Mouse | 13198 | siRNA | NM_001290183 | 185 | |
| Mouse | 13198 | siRNA | NM_007837 | 233 | |
| Mouse | 13198 | siRNA | NM_001290183 | 437 | |
| Mouse | 13198 | siRNA | NM_007837 | 485 |
List of shRNA target sequences used for RNA interference
| Species | Gene ID | mRNA target | RNA interference | Sequence |
| Human | 1649 | shRNA | ATTGAGGGTCACATCATTGGC | |
| Human | 1649 | shRNA | TTCTTCCTCTTCATTTCCAGG | |
| Human | 1649 | shRNA | TTGGTGCAGATTCACCATTCG | |
| Human | 1649 | shRNA | TTCCAGGAGGTGAAACATAGG | |
| Human | 1649 | shRNA | TTTCCTTTCATTCTCCTGTTC |
Composition of the control chow diet and palmitate-enriched diet
| NIH07 open formula rodent | NIH07 open formula rodent | |
| diet – original –0.8 % | diet – | |
| palmitic acid | 2.2 % palmitic acid | |
| Protein | 23.60 % w/w | 23.60 % w/w |
| Carbohydrates | 65.80 % w/w | 65.80 % w/w |
| Total Fat | 5.60 % w/w | 5.60 % w/w |
| Total Energy | 4.08 Kcal/gram | 4.08 Kcal/gram |
| Myristic acid (14:0) | 0.10 % w/w | 0.10 % w/w |
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| Stearic acid (18:0) | 0.20 % w/w | 0.20 % w/w |
| Palmitoleic acid (16:1) | Trace | trace |
| Oleic acid (18:1) | 1.20 % w/w | 1.20 % w/w |
| Gadoleic acid (20:1) | Trace | trace |
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| Linolenic acid (18:3 n3) | 0.20 % w/w | 0.20 % w/w |
| Arachadonic acid (20:4 n6) | Trace | trace |
| EPA (20:5 n3) | 0.10 % w/w | 0.10 % w/w |
| DHA (22:6 n3) | 0.30 % w/w | 0.30 % w/w |
Body weights of mice on control chow and palmitate-enriched diet
| C57BL/6J | C57BL/6J | |||
| Chow diet | PA diet | Chow diet | PA diet | |
| Initial weight (g) (9 months) | ||||
| (Mean±S.D, | 28.82±2.16 | 29.91±3.15 | 27.94±1.58 | 30.87±3.56 |
| Final weight (g) (12 months) | ||||
| (Mean±S.D, | 29.25±3.06 | 30.16±1.89 | 28.76±2.93 | 32.25±2.46 |
| Weight gain/loss (%) | 1.49 | 0.83 | 2.93 | 4.47 |
List of monoclonal and polyclonal antibodies used in the study
| Antibody | Dilution | Amount | Host | Manufacturer | Catalog # |
| ATF3 | 1:500 | 10 μg | rabbit | Sigma Aldrich | HPA001562 |
| ATF4 | 1:1000 | 5 μg | rabbit | Cell Signaling Technology | 11815 (D4B8) |
| ATF6 | 1:1000 | 5 μg | rabbit | Active Motif | 40962 |
| β-Actin | 1:2500 | 2 μg | mouse | Santa Cruz BioTechnology | sc-47778 (C4) |
| BACE1 | 1:1000 | 5 μg | rabbit | EMD Millipore | AB5832 |
| CHOP | 1:500 | 10 μg | rabbit | Cell Signaling Technology | 5554 (D46F1) |
| CTFα/ CTFβ | 1:400 | 12.5 μg | rabbit | BioLegend | 825001 |
| Histone H3 | 1:1000 | 5 μg | rabbit | Santa Cruz BioTechnology | sc-8654 (C16) |
| p-Ser724 IRE1α | 1:200 | 25 μg | rabbit | Abcam | ab48187 |
| IRE1α | 1:500 | 10 μg | rabbit | Cell Signaling Technology | 3294 (14C10) |
| p-Thr980 PERK | 1:500 | 10 μg | rabbit | Cell Signaling Technology | 3179 (16F8) |
| PERK | 1:500 | 10 μg | rabbit | Cell Signaling Technology | 3192 (C33E10) |
| sAβPPα | 1:500 | 10 μg | rabbit | BioLegend | 813501 |
| sAβPPβ | 1:500 | 10 μg | rabbit | BioLegend | 813401 |
Fig.1Dose response effects of the saturated fatty acids, palmitate and stearate, and their respective MUFA, palmitoleate and oleate, on the expression of ER stress markers and cell death in human neuroblastoma SH-SY5Y cells. A-D) Representative western blots show that treatment with exogenous palmitate (A) and stearate (B) at a concentration >100 μM for 24 h, while treatment with exogenous palmitoleate (C) and oleate (D) only at a concentration of >375 μM for 24 h, significantly increases the expression of ER stress markers - GRP78, GRP94, and CHOP in whole cell lysates from SH-SY5Y-APPSwe cells. E) Cell death assessed by the release of LDH in the conditioned medium shows that treatment with exogenous palmitate and stearate at a concentration >250 μM for 24 h, while treatment with exogenous palmitoleate and oleate only at a concentration of 500 μM for 24 h, evoked significant cell death in SH-SY5Y-APPSwe cells. Data is expressed as Mean±S.D and includes determination made in four (n = 4) separate cell culture experiments. ***p < 0.001 versus BSA-treated cells.
Fig.2Exogenous palmitate treatment and a palmitate-enriched diet evoke ER stress in human neuroblastoma SH-SY5Y cells and the mouse hippocampus, respectively. A) Representative western blots show that palmitate treatment (100 μM for 24 h) of SH-SY5Y-APPSwe cells and feeding C57BL/6J wild-type mice a palmitate-enriched diet for three months, results in the activation of the three arms of ER stress signaling - IRE1α, PERK, and ATF6 pathway as assessed by an increase in the phosphorylation of IRE1α and PERK as well as the augmentation in the nuclear translocation of ATF3, ATF4, ATF6, and CHOP. B) Palmitate treatment (100 μM for 24 h) of SH-SY5Y-APPSwe cells and feeding C57BL/6J wild-type mice a palmitate-enriched diet for three months, also increases the transcriptional activities of the six transcription factors measured in the hippocampus. Data is expressed as Mean±S.D and includes determination made in three (n = 3) separate cell culture experiments and six (n = 6) different animals from each group. ***p < 0.001 versus BSA-treated control cells or C57BL/6J wild-type mice fed a control chow diet. PA, palmitic acid.
Fig.3BACE1 expression and subsequent Aβ genesis is induced by the sFFA, palmitate and stearate, but not by their MUFA counterparts, palmitoleate and oleate. A) Representative western blots show that exogenous palmitate and stearate treatment (100 μM for 24 h), but not palmitoleate and oleate treatment (100 μM for 24 h), significantly increases BACE1 protein levels accompanied by an increase in the amyloidogenic processing of AβPP as evidenced by an increase in sAβPPβ and CTFβ levels concomitant with a decrease in sAβPPα and CTFα levels in the whole cell homogenates from SH-SY5Y-APPSwe cells. B, C) Exogenous palmitate and stearate treatment, but not palmitoleate and oleate treatment, significantly increases BACE1 mRNA expression (B) and BACE1 activity (C) in SH-SY5Y-APPSwe cells. D) ELISA immunoassays show that exogenous palmitate and stearate treatment, but not palmitoleate and oleate treatment, significantly increases the levels of the intracellular Aβ1 - 42 species in the whole cell lysates and secreted Aβ1 - 42 species in the conditioned media, from SH-SY5Y-APPSwe cells. The ER stress inducer, Tunicamycin, also increased the following - BACE1 protein levels (A), BACE1 mRNA expression (B) and BACE1 activity (C), and the ensuing levels of intracellular as well as secreted Aβ1 - 42 species (D) in SH-SY5Y-APPSwe cells. Data is expressed as Mean±S.D and includes determination made in four (n = 4) separate cell culture experiments. ***p < 0.001 versus BSA-treated cells.
Fig.4Palmitate induces BACE1 expression and subsequent Aβ genesis by inducing ER stress. A) Representative western blots show that pretreatment (for 2 h) of the human neuroblastoma cells with the molecular chaperone 4-PBA significantly precludes the palmitate-induced increase in BACE1 protein levels accompanied by a decrease in the amyloidogenic processing of AβPP as evidenced by a decrease in the palmitate-induced increase in sAβPPβ and CTFβ levels concomitant with an increase in the palmitate-induced decrease in sAβPPα and CTFα levels in the whole cell homogenates from SH-SY5Y-APPSwe cells. B, C) Pretreatment with 4-PBA attenuates the palmitate-induced increase in BACE1 mRNA expression (B) and BACE1 activity (C) in SH-SY5Y-APPSwe cells. D) ELISA immunoassays show that pretreatment with 4-PBA significantly attenuates the exogenous palmitate treatment-induced increase in the levels of the intracellular Aβ1 - 42 species in the whole cell lysates and secreted Aβ1 - 42 species in the conditioned media, from SH-SY5Y-APPSwe cells. Pretreatment (for 2 h) with the molecular chaperone 4-PBA also significantly precludes the Tunicamycin-induced increase in the following - BACE1 protein levels (A), BACE1 mRNA expression (B) and BACE1 activity (C), and intracellular as well as secreted Aβ1 - 42 species (D), in SH-SY5Y-APPSwe cells. Data is expressed as Mean±S.D and includes determination made in four (n = 4) separate cell culture experiments. *p < 0.05, **p < 0.01, ***p < 0.001 versus BSA-treated cells; ††p < 0.01, †††p < 0.001, versus palmitate-treated cells or Tunicamycin-treated cells.
Fig.5CHOP mediates the palmitate-induced increase in BACE1 expression and subsequent Aβ genesis. A) Representative western blots show that knocking-down CHOP expression using a RNAi approach significantly attenuates the palmitate-induced increase in BACE1 protein levels accompanied by a decrease in the amyloidogenic processing of AβPP as evidenced by a decrease in the palmitate-induced increase in sAβPPβ and CTFβ levels concomitant with an increase in the palmitate-induced decrease in sAβPPα and CTFα levels in the whole cell homogenates from SH-SY5Y-APPSwe cells. B, C) Knocking-down CHOP expression attenuates the palmitate-induced increase in BACE1 mRNA expression (B) and BACE1 activity (C) in SH-SY5Y-APPSwe cells. D) ELISA immunoassays show that knocking-down CHOP expression significantly mitigates the exogenous palmitate treatment-induced increase in the levels of the intracellular Aβ1 - 42 species in the whole cell lysates and secreted Aβ1 - 42 species in the conditioned media, from SH-SY5Y-APPSwe cells. Data is expressed as Mean±S.D and includes determination made in four (n = 4) separate cell culture experiments. **p < 0.01, ***p < 0.001 versus BSA-treated GFP knock-down cells or BSA-treated scrambled siRNA transfected cells; †p < 0.05, ††p < 0.01, versus palmitate-treated GFP knock-down cells or palmitate-treated scrambled siRNA transfected cells. PA, palmitic acid.
Fig.6Chop–/– mice are significantly protected from the palmitate-enriched diet-induced increase in BACE1 expression and ensuing Aβ genesis. A) Representative western blots show that nine-month-old Chop–/– mice fed a palmitate-enriched diet for three months, do not exhibit the increase in BACE1 protein levels as well as the accompanying increase in sAβPPβ and CTFβ levels concomitant with a decrease in sAβPPα and CTFα levels, to the same degree in the hippocampal region compared to the C57BL/6J wild-type mice fed a palmitate-enriched diet. B, C) Chop–/– mice fed a palmitate-enriched diet do not exhibit the increase in BACE1 mRNA expression (B) and BACE1 activity (C), to the same degree in the hippocampal region compared to the C57BL/6J wild-type mice fed a palmitate-enriched diet. D) ELISA immunoassays show that the Chop–/– mice fed a palmitate-enriched diet have significantly lower levels of total formic acid-soluble Aβ1 - 40 and Aβ1 - 42 species in the hippocampus, compared to the C57BL/6J wild-type mice fed a palmitate-enriched diet. Data is expressed as Mean±S.D and includes determination made in six (n = 6) different animals from each group. *p < 0.05, ***p < 0.001 versus C57BL/6J wild-type mice fed a control chow diet; †p < 0.05, ††p < 0.01, versus C57BL/6J wild-type mice fed a palmitate-enriched diet; p < 0.05 versus Chop–/– mice fed a control chow diet. PA, palmitic acid.
Fig.7Ectopic overexpression of native CHOP, but not the transcriptionally dead leucine zipper domain deficient mutant CHOP (CHOP LZ–), evokes an increase in BACE1 expression and subsequent Aβ genesis. A) Representative western blots show that the leucine zipper domain of CHOP that is responsible for its transcriptional activity, is necessary to induce BACE1 protein levels as well as the accompanying increase in sAβPPβ and CTFβ levels concomitant with a decrease in sAβPPα and CTFα levels in SH-SY5Y-APPSwe cells. C, D) Ectopic overexpression of native CHOP (wt CHOP), but not the transcriptionally dead leucine zipper domain deficient mutant CHOP (CHOP LZ–), elicits an increase in BACE1 mRNA expression (B) and BACE1 activity (C) in SH-SY5Y-APPSwe cells. D) ELISA immunoassays show that the ectopic overexpression of native CHOP (wt CHOP), but not the transcriptionally dead leucine zipper domain deficient mutant CHOP (CHOP LZ–), increases the levels of the intracellular Aβ1 - 42 species in the whole cell lysates and secreted Aβ1 - 42 species in the conditioned media, from SH-SY5Y-APPSwe cells. Data is expressed as Mean±S.D and includes determination made in three (n = 3) separate cell culture experiments. ***p < 0.001 versus empty vector (EV)-transfected cells.