Literature DB >> 28301747

Single-Cell Transcriptional Analysis.

Angela R Wu1, Jianbin Wang2, Aaron M Streets3, Yanyi Huang4.   

Abstract

Despite being a relatively recent technological development, single-cell transcriptional analysis through high-throughput sequencing has already been used in hundreds of fruitful studies to make exciting new biological discoveries that would otherwise be challenging or even impossible. Consequently, this has fueled a virtuous cycle of even greater interest in the field and compelled development of further improved technical methodologies and approaches. Thanks to the combined efforts of the research community, including the fields of biochemistry and molecular biology, technology and instrumentation, data science, computational biology, and bioinformatics, the single-cell RNA-sequencing field is advancing at a pace that is both astounding and unprecedented. In this review, we provide a broad introduction to this revolutionary technology by presenting the state-of-the-art in sample preparation methodologies, technology platforms, and computational analysis methods, while highlighting the key considerations for designing, executing, and interpreting a study using single-cell RNA sequencing.

Keywords:  RNA-seq; gene expression; heterogeneity; microfluidics; next-generation sequencing

Mesh:

Substances:

Year:  2017        PMID: 28301747     DOI: 10.1146/annurev-anchem-061516-045228

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   10.745


  27 in total

1.  Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics.

Authors:  Sarah M Williams; Andrey V Liyu; Chia-Feng Tsai; Ronald J Moore; Daniel J Orton; William B Chrisler; Matthew J Gaffrey; Tao Liu; Richard D Smith; Ryan T Kelly; Ljiljana Pasa-Tolic; Ying Zhu
Journal:  Anal Chem       Date:  2020-07-22       Impact factor: 6.986

Review 2.  Recent Developments in Single-Cell RNA-Seq of Microorganisms.

Authors:  Yi Zhang; Jiaxin Gao; Yanyi Huang; Jianbin Wang
Journal:  Biophys J       Date:  2018-06-26       Impact factor: 4.033

Review 3.  Beyond bulk: a review of single cell transcriptomics methodologies and applications.

Authors:  Ashwinikumar Kulkarni; Ashley G Anderson; Devin P Merullo; Genevieve Konopka
Journal:  Curr Opin Biotechnol       Date:  2019-04-10       Impact factor: 9.740

4.  Human Spermatogonial Stem Cells Scrutinized under the Single-Cell Magnifying Glass.

Authors:  Kun Tan; Miles F Wilkinson
Journal:  Cell Stem Cell       Date:  2019-02-07       Impact factor: 24.633

Review 5.  Innovative Molecular Testing Strategies for Adjunctive Investigations in Hemostasis and Thrombosis.

Authors:  Elham Ghorbanpour; David Lillicrap
Journal:  Semin Thromb Hemost       Date:  2019-08-12       Impact factor: 4.180

6.  Cell-type diversity and regionalized gene expression in the planarian intestine.

Authors:  David J Forsthoefel; Nicholas I Cejda; Umair W Khan; Phillip A Newmark
Journal:  Elife       Date:  2020-04-02       Impact factor: 8.140

7.  High-resolution single-cell transcriptomics reveals heterogeneity of self-renewing hair follicle stem cells.

Authors:  Gopal Chovatiya; Sangeeta Ghuwalewala; Lauren D Walter; Benjamin D Cosgrove; Tudorita Tumbar
Journal:  Exp Dermatol       Date:  2021-01-06       Impact factor: 3.960

8.  Simultaneous profiling of gene expression and chromatin accessibility in single cells.

Authors:  Miguel Reyes; Kianna Billman; Nir Hacohen; Paul C Blainey
Journal:  Adv Biosyst       Date:  2019-08-28

Review 9.  Illuminating Neural Circuits in Alzheimer's Disease.

Authors:  Yang Ying; Jian-Zhi Wang
Journal:  Neurosci Bull       Date:  2021-06-05       Impact factor: 5.271

Review 10.  Marrow adipogenic lineage precursor: A new cellular component of marrow adipose tissue.

Authors:  Leilei Zhong; Lutian Yao; Patrick Seale; Ling Qin
Journal:  Best Pract Res Clin Endocrinol Metab       Date:  2021-03-15       Impact factor: 5.667

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