Literature DB >> 28301743

Eukaryotic DNA Replication Fork.

Peter M J Burgers1, Thomas A Kunkel2.   

Abstract

This review focuses on the biogenesis and composition of the eukaryotic DNA replication fork, with an emphasis on the enzymes that synthesize DNA and repair discontinuities on the lagging strand of the replication fork. Physical and genetic methodologies aimed at understanding these processes are discussed. The preponderance of evidence supports a model in which DNA polymerase ε (Pol ε) carries out the bulk of leading strand DNA synthesis at an undisturbed replication fork. DNA polymerases α and δ carry out the initiation of Okazaki fragment synthesis and its elongation and maturation, respectively. This review also discusses alternative proposals, including cellular processes during which alternative forks may be utilized, and new biochemical studies with purified proteins that are aimed at reconstituting leading and lagging strand DNA synthesis separately and as an integrated replication fork.

Entities:  

Keywords:  CMG helicase; DNA polymerase; DNA primase; Okazaki fragment; replisome coordination

Mesh:

Substances:

Year:  2017        PMID: 28301743      PMCID: PMC5597965          DOI: 10.1146/annurev-biochem-061516-044709

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  146 in total

1.  Protein-protein interactions in the bacteriophage T4 replisome. The leading strand holoenzyme is physically linked to the lagging strand holoenzyme and the primosome.

Authors:  Faoud T Ishmael; Michael A Trakselis; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2002-11-09       Impact factor: 5.157

2.  Mcm10 plays an essential role in origin DNA unwinding after loading of the CMG components.

Authors:  Mai Kanke; Yukako Kodama; Tatsuro S Takahashi; Takuro Nakagawa; Hisao Masukata
Journal:  EMBO J       Date:  2012-03-20       Impact factor: 11.598

3.  Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}.

Authors:  Stephanie A Nick McElhinny; Grace E Kissling; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

4.  A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously.

Authors:  Chiara Indiani; Peter McInerney; Roxana Georgescu; Myron F Goodman; Mike O'Donnell
Journal:  Mol Cell       Date:  2005-09-16       Impact factor: 17.970

5.  Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork.

Authors:  Arturo Calzada; Ben Hodgson; Masato Kanemaki; Avelino Bueno; Karim Labib
Journal:  Genes Dev       Date:  2005-08-15       Impact factor: 11.361

Review 6.  DNA replicases from a bacterial perspective.

Authors:  Charles S McHenry
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 7.  Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes.

Authors:  Young-Hoon Kang; Chul-Hwan Lee; Yeon-Soo Seo
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-04       Impact factor: 8.250

8.  In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta.

Authors:  Y I Pavlov; P V Shcherbakova; T A Kunkel
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

9.  Initiation of simian virus 40 DNA synthesis in vitro.

Authors:  P A Bullock; Y S Seo; J Hurwitz
Journal:  Mol Cell Biol       Date:  1991-05       Impact factor: 4.272

10.  RNase H2-initiated ribonucleotide excision repair.

Authors:  Justin L Sparks; Hyongi Chon; Susana M Cerritelli; Thomas A Kunkel; Erik Johansson; Robert J Crouch; Peter M Burgers
Journal:  Mol Cell       Date:  2012-08-02       Impact factor: 17.970

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  157 in total

1.  Cidofovir Diphosphate Inhibits Adenovirus 5 DNA Polymerase via both Nonobligate Chain Termination and Direct Inhibition, and Polymerase Mutations Confer Cidofovir Resistance on Intact Virus.

Authors:  Jeffrey M Chamberlain; Katherine Sortino; Phiroze Sethna; Andrew Bae; Randall Lanier; Robert A Bambara; Stephen Dewhurst
Journal:  Antimicrob Agents Chemother       Date:  2018-12-21       Impact factor: 5.191

2.  Redox Chemistry in the Genome: Emergence of the [4Fe4S] Cofactor in Repair and Replication.

Authors:  Jacqueline K Barton; Rebekah M B Silva; Elizabeth O'Brien
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

Review 3.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

4.  Mathematical description of eukaryotic chromosome replication.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-19       Impact factor: 11.205

Review 5.  Proteolytic control of genome integrity at the replication fork.

Authors:  Julie Rageul; Alexandra S Weinheimer; Jennifer J Park; Hyungjin Kim
Journal:  DNA Repair (Amst)       Date:  2019-07-10

6.  Crystal structure of the human Polϵ B-subunit in complex with the C-terminal domain of the catalytic subunit.

Authors:  Andrey G Baranovskiy; Jianyou Gu; Nigar D Babayeva; Igor Kurinov; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2017-07-26       Impact factor: 5.157

7.  Loss of the p12 subunit of DNA polymerase delta leads to a defect in HR and sensitization to PARP inhibitors.

Authors:  Sufang Zhang; Hsiao Hsiang Chao; Xiaoxiao Wang; Zhongtao Zhang; Ernest Y C Lee; Marietta Y W T Lee
Journal:  DNA Repair (Amst)       Date:  2018-11-13

8.  Rtt105 functions as a chaperone for replication protein A to preserve genome stability.

Authors:  Shuqi Li; Zhiyun Xu; Jiawei Xu; Linyu Zuo; Chuanhe Yu; Pu Zheng; Haiyun Gan; Xuezheng Wang; Longtu Li; Sushma Sharma; Andrei Chabes; Di Li; Sheng Wang; Sihao Zheng; Jinbao Li; Xuefeng Chen; Yujie Sun; Dongyi Xu; Junhong Han; Kuiming Chan; Zhi Qi; Jianxun Feng; Qing Li
Journal:  EMBO J       Date:  2018-07-31       Impact factor: 11.598

9.  PCNA accelerates the nucleotide incorporation rate by DNA polymerase δ.

Authors:  Tanumoy Mondol; Joseph L Stodola; Roberto Galletto; Peter M Burgers
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

10.  Activity and fidelity of human DNA polymerase α depend on primer structure.

Authors:  Andrey G Baranovskiy; Vincent N Duong; Nigar D Babayeva; Yinbo Zhang; Youri I Pavlov; Karen S Anderson; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2018-03-19       Impact factor: 5.157

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