Literature DB >> 28300394

An Asymmetric Conformational Change in LacY.

Irina Smirnova1, Vladimir Kasho1, Xiaoxu Jiang1, H Ronald Kaback1.   

Abstract

Galactoside/H+ symport by the lactose permease of Escherichia coli (LacY) involves reciprocal opening and closing of periplasmic and cytoplasmic cavities so that sugar- and H+-binding sites become alternatively accessible to either side of the membrane. After reconstitution into proteoliposomes, LacY with the periplasmic cavity sealed by cross-linking paired-Cys residues does not bind sugar from the periplasmic side. However, reduction of the S-S bond restores opening of the periplasmic cavity and galactoside binding. Furthermore, nanobodies that stabilize the double-Cys mutant in a periplasmic-open conformation and allow free access of galactoside to the binding site do so only after reduction of the S-S bond. In contrast, when cross-linked LacY is solubilized in detergent, galactoside binding is observed, indicating that the cytoplasmic cavity is patent. Sugar binding from the cytoplasmic side exhibits nonlinear stopped-flow kinetics, and analysis reveals a two-step process in which a conformational change precedes binding. Because the cytoplasmic cavity is spontaneously closing and opening in the symporter with a sealed periplasmic cavity, it is apparent that an asymmetrical conformational transition controls access of sugar to the binding site.

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Year:  2017        PMID: 28300394      PMCID: PMC5456262          DOI: 10.1021/acs.biochem.7b00134

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Structure and mechanism of the lactose permease of Escherichia coli.

Authors:  Jeff Abramson; Irina Smirnova; Vladimir Kasho; Gillian Verner; H Ronald Kaback; So Iwata
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

2.  Transient conformers of LacY are trapped by nanobodies.

Authors:  Irina Smirnova; Vladimir Kasho; Xiaoxu Jiang; Els Pardon; Jan Steyaert; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-28       Impact factor: 11.205

3.  A chemiosmotic mechanism of symport.

Authors:  H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-07       Impact factor: 11.205

Review 4.  Essential role of conformational selection in ligand binding.

Authors:  Austin D Vogt; Nicola Pozzi; Zhiwei Chen; Enrico Di Cera
Journal:  Biophys Chem       Date:  2013-09-25       Impact factor: 2.352

5.  Sequence alignment and homology threading reveals prokaryotic and eukaryotic proteins similar to lactose permease.

Authors:  Vladimir N Kasho; Irina N Smirnova; H Ronald Kaback
Journal:  J Mol Biol       Date:  2006-03-09       Impact factor: 5.469

6.  Lactose permease and the alternating access mechanism.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Biochemistry       Date:  2011-10-19       Impact factor: 3.162

7.  Protonation and sugar binding to LacY.

Authors:  Irina N Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-20       Impact factor: 11.205

8.  Purified reconstituted lac carrier protein from Escherichia coli is fully functional.

Authors:  P Viitanen; M L Garcia; H R Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

9.  Sugar binding induces an outward facing conformation of LacY.

Authors:  Irina Smirnova; Vladimir Kasho; Jun-Yong Choe; Christian Altenbach; Wayne L Hubbell; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-09       Impact factor: 11.205

10.  Identification of the epitope for monoclonal antibody 4B1 which uncouples lactose and proton translocation in the lactose permease of Escherichia coli.

Authors:  J Sun; J Wu; N Carrasco; H R Kaback
Journal:  Biochemistry       Date:  1996-01-23       Impact factor: 3.162

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  7 in total

1.  Engineered occluded apo-intermediate of LacY.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-26       Impact factor: 11.205

2.  Induced Fit Is a Special Case of Conformational Selection.

Authors:  Pradipta Chakraborty; Enrico Di Cera
Journal:  Biochemistry       Date:  2017-05-22       Impact factor: 3.162

3.  Oversized galactosides as a probe for conformational dynamics in LacY.

Authors:  Irina Smirnova; Vladimir Kasho; Xiaoxu Jiang; Hong-Ming Chen; Stephen G Withers; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-30       Impact factor: 11.205

Review 4.  It takes two to tango: The dance of the permease.

Authors:  H Ronald Kaback; Lan Guan
Journal:  J Gen Physiol       Date:  2019-05-30       Impact factor: 4.086

Review 5.  Mechanisms of ligand binding.

Authors:  Enrico Di Cera
Journal:  Biophys Rev       Date:  2020-12

6.  The proton electrochemical gradient induces a kinetic asymmetry in the symport cycle of LacY.

Authors:  Xiaoxu Jiang; Natalia Ermolova; John Lim; Seo Woo Choi; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-30       Impact factor: 11.205

Review 7.  Function Trumps Form in Two Sugar Symporters, LacY and vSGLT.

Authors:  Jeff Abramson; Ernest M Wright
Journal:  Int J Mol Sci       Date:  2021-03-30       Impact factor: 5.923

  7 in total

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