| Literature DB >> 28298235 |
Myat Htut Nyunt1,2, Jin-Hee Han1, Bo Wang3, Khin Myo Aye2, Kyin Hla Aye2, Seong-Kyun Lee1, Ye Htut2, Myat Phone Kyaw2, Kay Thwe Han2, Eun-Taek Han4.
Abstract
BACKGROUND: One of the major challenges for control and elimination of malaria is ongoing spread and emergence of drug resistance. While epidemiology and surveillance of the drug resistance in falciparum malaria is being explored globally, there are few studies on drug resistance vivax malaria.Entities:
Keywords: Drug resistance; Malaria; Molecular surveillance; Myanmar; Plasmodium vivax
Mesh:
Substances:
Year: 2017 PMID: 28298235 PMCID: PMC5353783 DOI: 10.1186/s12936-017-1770-7
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Fig. 1Retrospective and prospective analysis of the clinical surveillance of drug resistance in vivax malaria in Myanmar (2009–2016). Retrospective analysis was conducted in 906 vivax infected cases in nine sentinel sites. Prospective study with molecular surveillance was conducted in Buthidaung (western Myanmar in 2015), Shwegyin (central Myanmar in 2014) and Kawthaung (southern Myanmar in 2015–2016). Clinical failure cases were found only at southern and western Myanmar
Pairs of primers used to amplify the target genes
| Target gene | Primer name | Primer sequences (5’→3’) |
|---|---|---|
|
| Pvcrto_F | TCC TTG CCG CTG ATT CTA CG |
| Pvcrto_R | GGT AAC GTT CAT CGG GGG TT | |
|
| Pvmdr1_F3 | GGA TAG TCA TGC CCC AGG ATT G |
| Pvmdr1_R3 | CAT CAA CTT CCC GGC GTA GC | |
|
| Pvdhfr_F1 | ATG GAG GAC CTT TCA GAT GTA TT |
| Pvdhfr_R1 | CCA CCT TGC TGT AAA CCA AAA AGT CCA GAG | |
|
| Pvdhps_D | GGT TTA TTT GTC GAT CCT GTG |
| Pvdhps_B | GAG ATT ACC CTA AGG TTG ATG TAT C |
Basic characteristics of the study participants
| Characteristics | All site (n = 208) | Kawthaung (n = 60) | Shwegyin (n = 88) | Buthidaung (n = 60) |
|
|---|---|---|---|---|---|
| Mean age (SD) | 24.16 (9.03) | 26.27 (10.72) | 22.59 (7.99) | 24.35 (8.30) | 0.091 |
| M:F | 1.6:1:0 | 9.0:1.0 | 4.5:1.0 | 60.0:0.0 | 0.002 |
| Parasite count (p/μL) geometric mean (95% CI) | 4160 (3567–4851) | 3325 (2404–4597) | 4795 (3866–5948) | 4225 (3140–5685) | 0.520 |
| ACPR (n, %) | 205, 98.6 | 59, 98.3 | 88, 100.0 | 58, 96.7 | 0.258 |
SD standard deviation, M male, F female, CI Confident interval, ACPR adequate clinical and parasitological response
Fig. 2Molecular marker analysis of drug resistance in vivax malaria in three sentinel sites in Myanmar (2014–2016). A total of 208 from three sentinel sites were included for molecular marker analysis. K10 (AAG) insert of pvcrt-O gene, and mutations of pvmdr1, pvdhps and pvdhfr were shown. Among three sites, the prevalence of all markers except F1076L of pvmdr1 were fewest in Buthidaung site
Prevalence of the individual single nucleotide polymorphisms (SNPs) in all study sites
| Target genes | Kawthaung (n = 60) | Shwegyin (n = 88) | Buthidaung (n = 60) | All site (n = 208) |
|
|---|---|---|---|---|---|
|
| |||||
| ‘AAG’ insert | 40 (66.7) | 64 (72.7) | 29 (48.3) | 133 (63.9) | 0.009 |
|
| |||||
| T958M | 60 (100.0) | 88 (100.0) | 60 (100.0) | 208 (100.0) | NR |
| Y976F | 16 (26.7) | 15 (17.0) | 1 (1.7) | 32 (15.4) | 0.001 |
| F1076L | 25 (41.7) | 43 (48.9) | 38 (63.3) | 106 (51.0) | 0.067 |
|
| |||||
| S382A | 32 (53.3) | 24 (27.3) | 5 (8.3) | 61 (29.3) | 0.000 |
| A383G | 60 (100.0) | 87 (98.9) | 30 (50.0) | 177 (85.1) | 0.000 |
| K512M | 22 (36.7) | 10 (11.4) | 7 (11.7) | 39 (18.8) | 0.000 |
| A553G | 55 (91.7) | 71 (80.7) | 28 (46.7) | 154 (74.0) | 0.000 |
|
| |||||
| F57L/I | 46 (76.7) | 73 (83.0) | 35 (58.3) | 154 (74.0) | 0.001 |
| S58R | 59 (98.3) | 88 (100.0) | 48 (80.0) | 195 (93.8) | 0.000 |
| T61M | 45 (75.0) | 71 (80.7) | 32 (53.3) | 148 (71.2) | 0.001 |
| S117T/N | 58 (96.7) | 86 (97.7) | 52 (86.6) | 196 (94.2) | 0.003 |
Prevalence of SNPs were shown as ‘number (percent)’ of respective site. All P value were calculated by Chi square test with 95% CI
NR not relevant to be calculated
Co-prevalence of single nucleotide polymorphisms (SNPs) in different molecular markers in sentinel sites
| Target | Descriptiona | No. isolate/total (%) | |||
|---|---|---|---|---|---|
| Kawthaung (n = 60) | Shwegyin (n = 88) | Buthidaung (n = 60) | All sites (n = 208) | ||
|
| Wild type | 20 (33.3) | 24 (27.3) | 31 (51.7) | 75 (36.1) |
| Mutant (AAG insert) | 40 (66.7) | 64 (72.7) | 29 (48.3) | 133 (63.9) | |
|
| Wild type (T, Y, F) (958, 976, 1976) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Single mutant ( | 35 (58.3) | 46 (52.3) | 22 (36.7) | 103 (49.5) | |
| Double mutant ( | 9 (15.0) | 27 (30.7) | 37 (61.7) | 73 (35.1) | |
| Triple mutant ( | 16 (26.7) | 15 (17.0) | 1 (1.7) | 32 (15.4) | |
|
| Wild (S, A, K, A) (382, 383, 512, 553) | 0 (0.0) | 1 (1.1) | 30 (50.0) | 31 (14.9) |
| Single mutant (S, | 5 (8.3) | 15 (17.0) | 2 (3.3) | 22 (10.6) | |
| Double mutant (S, | 18 (30.0) | 45 (51.1) | 18 (30.0) | 81 (38.9) | |
| Double mutant ( | 0 (0.0) | 1 (1.1) | 0 (0.0) | 1 (0.5) | |
| Triple mutant ( | 15 (25.0) | 16 (18.2) | 3 (5.0) | 34 (16.3) | |
| Triple mutant (S, | 0 (0.0) | 2 (2.3) | 0 (0.0) | 2 (1.0) | |
| Triple mutant (S, | 5 (8.3) | 1 (1.1) | 5 (8.3) | 11 (5.3) | |
| Quadruple mutant ( | 17 (28.3) | 6 (6.8) | 2 (3.3) | 25 (12.0) | |
| Quadruple mutant ( | 0 (0.0) | 1 (1.1) | 0 (0.0) | 1 (0.5) | |
|
| Wild (F, S, T, S) (57, 58, 61, 117) | 0 (0.0) | 0 (0.0) | 5 (8.3) | 5 (2.4) |
| Single mutant ( | 1 (1.7) | 0 (0.0) | 2 (3.3) | 3 (1.4) | |
| Single mutant (F, | 1 (1.7) | 0 (0.0) | 0 (0.0) | 1 (0.5) | |
| Single mutant (F, S, T, | 0 (0.0) | 0 (0.0) | 5 (8.3) | 5 (2.4) | |
| Double mutant ( | 0 (0.0) | 2 (2.3) | 1 (1.7) | 3 (1.4) | |
| Double mutant (F, | 13 (21.7) | 14 (15.9) | 15 (25.0) | 42 (20.2) | |
| Triple mutant ( | 0 (0.0) | 1 (1.1) | 0 (0.0) | 1 (0.5) | |
| Triple mutant (F, | 0 (0.0) | 1 (1.1) | 0 (0.0) | 1 (0.5) | |
| Quadruple mutant ( | 45 (75.0) | 70 (79.5) | 32 (53.3) | 147 (70.7) | |
a Numbers in parentheses indicate the amino acid position. Mutant amino acids are shown in bold. All sequences were aligned with Sal-1 (P. vivax) reference sequences from Plasmodium data base