Literature DB >> 28297664

Coupling between Protein Stability and Catalytic Activity Determines Pathogenicity of G6PD Variants.

Anna D Cunningham1, Alexandre Colavin2, Kerwyn Casey Huang3, Daria Mochly-Rosen4.   

Abstract

G6PD deficiency, an enzymopathy affecting 7% of the world population, is caused by over 160 identified amino acid variants in glucose-6-phosphate dehydrogenase (G6PD). The clinical presentation of G6PD deficiency is diverse, likely due to the broad distribution of variants across the protein and the potential for multidimensional biochemical effects. In this study, we use bioinformatic and biochemical analyses to interpret the relationship between G6PD variants and their clinical phenotype. Using structural information and statistical analyses of known G6PD variants, we predict the molecular phenotype of five uncharacterized variants from a reference population database. Through multidimensional analysis of biochemical data, we demonstrate that the clinical phenotypes of G6PD variants are largely determined by a trade-off between protein stability and catalytic activity. This work expands the current understanding of the biochemical underpinnings of G6PD variant pathogenicity and suggests a promising avenue for correcting G6PD deficiency by targeting essential structural features of G6PD.
Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ExAC database; G6PD; G6PD deficiency; PCA; VUS; enzyme activity; enzymopathy; missense variants; protein stability; variants of unknown significance

Mesh:

Substances:

Year:  2017        PMID: 28297664      PMCID: PMC5396575          DOI: 10.1016/j.celrep.2017.02.048

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  41 in total

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Authors:  Emmanuel D Levy
Journal:  J Mol Biol       Date:  2010-09-22       Impact factor: 5.469

2.  Human glucose-6-phosphate dehydrogenase: the crystal structure reveals a structural NADP(+) molecule and provides insights into enzyme deficiency.

Authors:  S W Au; S Gover; V M Lam; M J Adams
Journal:  Structure       Date:  2000-03-15       Impact factor: 5.006

Review 3.  Glucose-6-Phosphate Dehydrogenase Deficiency and the Need for a Novel Treatment to Prevent Kernicterus.

Authors:  Anna D Cunningham; Sunhee Hwang; Daria Mochly-Rosen
Journal:  Clin Perinatol       Date:  2016-02-28       Impact factor: 3.430

4.  Glucose-6-phosphate dehydrogenase deficiency in northern Mexico and description of a novel mutation.

Authors:  N García-Magallanes; F Luque-Ortega; E M Aguilar-Medina; R Ramos-Payán; C Galaviz-Hernández; J G Romero-Quintana; L Del Pozo-Yauner; H Rangel-Villalobos; E Arámbula-Meraz
Journal:  J Genet       Date:  2014-08       Impact factor: 1.166

Review 5.  The molecular basis of glucose-6-phosphate dehydrogenase deficiency.

Authors:  T Vulliamy; P Mason; L Luzzatto
Journal:  Trends Genet       Date:  1992-04       Impact factor: 11.639

6.  Structural studies of glucose-6-phosphate and NADP+ binding to human glucose-6-phosphate dehydrogenase.

Authors:  Masayo Kotaka; Sheila Gover; Lucy Vandeputte-Rutten; Shannon W N Au; Veronica M S Lam; Margaret J Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-04-20

Review 7.  The global prevalence of glucose-6-phosphate dehydrogenase deficiency: a systematic review and meta-analysis.

Authors:  Ella T Nkhoma; Charles Poole; Vani Vannappagari; Susan A Hall; Ernest Beutler
Journal:  Blood Cells Mol Dis       Date:  2009-02-23       Impact factor: 3.039

8.  Purification and detailed study of two clinically different human glucose 6-phosphate dehydrogenase variants, G6PD(Plymouth) and G6PD(Mahidol): Evidence for defective protein folding as the basis of disease.

Authors:  Yuxiang Huang; Mei Yee Choi; Shannon Wing Ngor Au; Deborah Man Yee Au; Veronica Min Sien Lam; Paul C Engel
Journal:  Mol Genet Metab       Date:  2007-10-23       Impact factor: 4.797

9.  Functional and Biochemical Characterization of Three Recombinant Human Glucose-6-Phosphate Dehydrogenase Mutants: Zacatecas, Vanua-Lava and Viangchan.

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Journal:  Int J Mol Sci       Date:  2016-05-21       Impact factor: 5.923

10.  G6PD protects from oxidative damage and improves healthspan in mice.

Authors:  Sandrina Nóbrega-Pereira; Pablo J Fernandez-Marcos; Thomas Brioche; Mari Carmen Gomez-Cabrera; Andrea Salvador-Pascual; Juana M Flores; Jose Viña; Manuel Serrano
Journal:  Nat Commun       Date:  2016-03-15       Impact factor: 14.919

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  21 in total

1.  Glucose-6-Phosphate Dehydrogenase Is Not Essential for K-Ras-Driven Tumor Growth or Metastasis.

Authors:  Jonathan M Ghergurovich; Mark Esposito; Zihong Chen; Joshua Z Wang; Vrushank Bhatt; Taijin Lan; Eileen White; Yibin Kang; Jessie Yanxiang Guo; Joshua D Rabinowitz
Journal:  Cancer Res       Date:  2020-07-13       Impact factor: 12.701

Review 2.  Treatment strategies for glucose-6-phosphate dehydrogenase deficiency: past and future perspectives.

Authors:  Adriana A Garcia; Ana Koperniku; Julio C B Ferreira; Daria Mochly-Rosen
Journal:  Trends Pharmacol Sci       Date:  2021-08-10       Impact factor: 17.638

3.  Extracting Complementary Insights from Molecular Phenotypes for Prioritization of Disease-Associated Mutations.

Authors:  Shayne D Wierbowski; Robert Fragoza; Siqi Liang; Haiyuan Yu
Journal:  Curr Opin Syst Biol       Date:  2018-09-17

4.  Small-Molecule Activators of Glucose-6-phosphate Dehydrogenase (G6PD) Bridging the Dimer Interface.

Authors:  Andrew G Raub; Sunhee Hwang; Naoki Horikoshi; Anna D Cunningham; Simin Rahighi; Soichi Wakatsuki; Daria Mochly-Rosen
Journal:  ChemMedChem       Date:  2019-06-27       Impact factor: 3.466

5.  Associations of Mitochondrial and Nuclear Mitochondrial Variants and Genes with Seven Metabolic Traits.

Authors:  Aldi T Kraja; Chunyu Liu; Jessica L Fetterman; Mariaelisa Graff; Christian Theil Have; Charles Gu; Lisa R Yanek; Mary F Feitosa; Dan E Arking; Daniel I Chasman; Kristin Young; Symen Ligthart; W David Hill; Stefan Weiss; Jian'an Luan; Franco Giulianini; Ruifang Li-Gao; Fernando P Hartwig; Shiow J Lin; Lihua Wang; Tom G Richardson; Jie Yao; Eliana P Fernandez; Mohsen Ghanbari; Mary K Wojczynski; Wen-Jane Lee; Maria Argos; Sebastian M Armasu; Ruteja A Barve; Kathleen A Ryan; Ping An; Thomas J Baranski; Suzette J Bielinski; Donald W Bowden; Ulrich Broeckel; Kaare Christensen; Audrey Y Chu; Janie Corley; Simon R Cox; Andre G Uitterlinden; Fernando Rivadeneira; Cheryl D Cropp; E Warwick Daw; Diana van Heemst; Lisa de Las Fuentes; He Gao; Ioanna Tzoulaki; Tarunveer S Ahluwalia; Renée de Mutsert; Leslie S Emery; A Mesut Erzurumluoglu; James A Perry; Mao Fu; Nita G Forouhi; Zhenglong Gu; Yang Hai; Sarah E Harris; Gibran Hemani; Steven C Hunt; Marguerite R Irvin; Anna E Jonsson; Anne E Justice; Nicola D Kerrison; Nicholas B Larson; Keng-Hung Lin; Latisha D Love-Gregory; Rasika A Mathias; Joseph H Lee; Matthias Nauck; Raymond Noordam; Ken K Ong; James Pankow; Amit Patki; Alison Pattie; Astrid Petersmann; Qibin Qi; Rasmus Ribel-Madsen; Rebecca Rohde; Kevin Sandow; Theresia M Schnurr; Tamar Sofer; John M Starr; Adele M Taylor; Alexander Teumer; Nicholas J Timpson; Hugoline G de Haan; Yujie Wang; Peter E Weeke; Christine Williams; Hongsheng Wu; Wei Yang; Donglin Zeng; Daniel R Witte; Bruce S Weir; Nicholas J Wareham; Henrik Vestergaard; Stephen T Turner; Christian Torp-Pedersen; Evie Stergiakouli; Wayne Huey-Herng Sheu; Frits R Rosendaal; M Arfan Ikram; Oscar H Franco; Paul M Ridker; Thomas T Perls; Oluf Pedersen; Ellen A Nohr; Anne B Newman; Allan Linneberg; Claudia Langenberg; Tuomas O Kilpeläinen; Sharon L R Kardia; Marit E Jørgensen; Torben Jørgensen; Thorkild I A Sørensen; Georg Homuth; Torben Hansen; Mark O Goodarzi; Ian J Deary; Cramer Christensen; Yii-Der Ida Chen; Aravinda Chakravarti; Ivan Brandslund; Klaus Bonnelykke; Kent D Taylor; James G Wilson; Santiago Rodriguez; Gail Davies; Bernardo L Horta; Bharat Thyagarajan; D C Rao; Niels Grarup; Victor G Davila-Roman; Gavin Hudson; Xiuqing Guo; Donna K Arnett; Caroline Hayward; Dhananjay Vaidya; Dennis O Mook-Kanamori; Hemant K Tiwari; Daniel Levy; Ruth J F Loos; Abbas Dehghan; Paul Elliott; Afshan N Malik; Robert A Scott; Diane M Becker; Mariza de Andrade; Michael A Province; James B Meigs; Jerome I Rotter; Kari E North
Journal:  Am J Hum Genet       Date:  2018-12-27       Impact factor: 11.025

6.  Prevalence and Molecular Characterization of Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency in Females from Previously Malaria Endemic Regions in Northeastern Thailand and Identification of a Novel G6PD Variant.

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Journal:  Mediterr J Hematol Infect Dis       Date:  2021-05-01       Impact factor: 2.576

Review 7.  Prevalence, genetic variants and clinical implications of G-6-PD deficiency in Burkina Faso: a systematic review.

Authors:  Abdoul Karim Ouattara; Pouiré Yameogo; Lassina Traore; Birama Diarra; Maléki Assih; Tegwindé Rébéca Compaore; Dorcas Obiri-Yeboah; Serge Théophile Soubeiga; Florencia Wendkuuni Djigma; Jacques Simpore
Journal:  BMC Med Genet       Date:  2017-11-23       Impact factor: 2.103

8.  Validation of the quantitative point-of-care CareStart biosensor for assessment of G6PD activity in venous blood.

Authors:  Germana Bancone; Gornpan Gornsawun; Cindy S Chu; Pen Porn; Sampa Pal; Pooja Bansil; Gonzalo J Domingo; Francois Nosten
Journal:  PLoS One       Date:  2018-05-08       Impact factor: 3.240

9.  A trade off between catalytic activity and protein stability determines the clinical manifestations of glucose-6-phosphate dehydrogenase (G6PD) deficiency.

Authors:  Usa Boonyuen; Kamonwan Chamchoy; Thitiluck Swangsri; Thanyaphorn Junkree; Nicholas P J Day; Nicholas J White; Mallika Imwong
Journal:  Int J Biol Macromol       Date:  2017-06-03       Impact factor: 6.953

10.  Inhibition of Drp1/Fis1 interaction slows progression of amyotrophic lateral sclerosis.

Authors:  Amit U Joshi; Nay L Saw; Hannes Vogel; Anna D Cunnigham; Mehrdad Shamloo; Daria Mochly-Rosen
Journal:  EMBO Mol Med       Date:  2018-03       Impact factor: 12.137

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