Literature DB >> 28297627

Clinical and Technical Aspects of Genomic Diagnostics for Precision Oncology.

Yuri Sheikine1, Frank C Kuo1, Neal I Lindeman1.   

Abstract

The emergence of precision medicine has been predicated on significant recent advances in diagnostic technology, particularly the advent of next-generation sequencing (NGS). Although the chemical technology underlying NGS is complex, and the computational biology expertise required to build systems to facilely interpret the results is highly specialized, the variables involved in designing and deploying a genomic testing program for cancer can be readily understood and applied by understanding several basic considerations. In this review, we present key strategic decisions required to optimize a genomic testing program and summarize the technical aspects of different technologies that render those methods more or less suitable for different types of programs.

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Year:  2017        PMID: 28297627     DOI: 10.1200/JCO.2016.70.7539

Source DB:  PubMed          Journal:  J Clin Oncol        ISSN: 0732-183X            Impact factor:   44.544


  15 in total

Review 1.  Colorectal cancer genomics and designing rational trials.

Authors:  Sebastian Mondaca; Rona Yaeger
Journal:  Ann Transl Med       Date:  2018-05

Review 2.  Diagnosis and classification of hematologic malignancies on the basis of genetics.

Authors:  Justin Taylor; Wenbin Xiao; Omar Abdel-Wahab
Journal:  Blood       Date:  2017-06-09       Impact factor: 22.113

Review 3.  The relative utilities of genome-wide, gene panel, and individual gene sequencing in clinical practice.

Authors:  Frank C Kuo; Brenton G Mar; R Coleman Lindsley; Neal I Lindeman
Journal:  Blood       Date:  2017-06-09       Impact factor: 22.113

Review 4.  TRK Inhibition: A New Tumor-Agnostic Treatment Strategy.

Authors:  Shivaani Kummar; Ulrik N Lassen
Journal:  Target Oncol       Date:  2018-10       Impact factor: 4.493

5.  EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer.

Authors:  Leila Mirsadeghi; Reza Haji Hosseini; Ali Mohammad Banaei-Moghaddam; Kaveh Kavousi
Journal:  BMC Med Genomics       Date:  2021-05-07       Impact factor: 3.063

6.  Houston Methodist Variant Viewer: An Application to Support Clinical Laboratory Interpretation of Next-generation Sequencing Data for Cancer.

Authors:  Paul A Christensen; Yunyun Ni; Feifei Bao; Heather L Hendrickson; Michael Greenwood; Jessica S Thomas; S Wesley Long; Randall J Olsen
Journal:  J Pathol Inform       Date:  2017-11-23

7.  Personalized treatment based on mini patient-derived xenografts and WES/RNA sequencing in a patient with metastatic duodenal adenocarcinoma.

Authors:  Peng Zhao; Hui Chen; Danyi Wen; Shuo Mou; Feifei Zhang; Shusen Zheng
Journal:  Cancer Commun (Lond)       Date:  2018-08-23

Review 8.  Testing algorithm for identification of patients with TRK fusion cancer.

Authors:  Frédérique Penault-Llorca; Erin R Rudzinski; Antonia R Sepulveda
Journal:  J Clin Pathol       Date:  2019-05-09       Impact factor: 3.411

Review 9.  Detection of Tumor NTRK Gene Fusions to Identify Patients Who May Benefit from Tyrosine Kinase (TRK) Inhibitor Therapy.

Authors:  Susan J Hsiao; Ahmet Zehir; Anthony N Sireci; Dara L Aisner
Journal:  J Mol Diagn       Date:  2019-05-07       Impact factor: 5.568

Review 10.  NTRK Fusions, from the Diagnostic Algorithm to Innovative Treatment in the Era of Precision Medicine.

Authors:  Federica Zito Marino; Francesca Pagliuca; Andrea Ronchi; Immacolata Cozzolino; Marco Montella; Massimiliano Berretta; Maria Elena Errico; Vittoria Donofrio; Roberto Bianco; Renato Franco
Journal:  Int J Mol Sci       Date:  2020-05-25       Impact factor: 5.923

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