Literature DB >> 28292625

'Candidatus Dichloromethanomonas elyunquensis' gen. nov., sp. nov., a dichloromethane-degrading anaerobe of the Peptococcaceae family.

Sara Kleindienst1, Steven A Higgins2, Despina Tsementzi3, Gao Chen4, Konstantinos T Konstantinidis5, E Erin Mack6, Frank E Löffler7.   

Abstract

Taxonomic assignments of anaerobic dichloromethane (DCM)-degrading bacteria remain poorly constrained but are important for understanding the microbial diversity of organisms contributing to DCM turnover in environmental systems. We describe the taxonomic classification of a novel DCM degrader in consortium RM obtained from pristine Rio Mameyes sediment. Phylogenetic analysis of full-length 16S rRNA gene sequences demonstrated that the DCM degrader was most closely related to members of the genera Dehalobacter and Syntrophobotulus, but sequence similarities did not exceed 94% and 93%, respectively. Genome-aggregate average amino acid identities against Peptococcaceae members did not exceed 66%, suggesting that the DCM degrader does not affiliate with any described genus. Phylogenetic analysis of conserved single-copy functional genes supported that the DCM degrader represents a novel clade. Growth strictly depended on the presence of DCM, which was consumed at a rate of 160±3μmolL-1 d-1. The DCM degrader attained 5.25×107±1.0×107 cells per μmol DCM consumed. Fluorescence in situ hybridization revealed rod-shaped cells 4±0.8μm long and 0.4±0.1μm wide. Based on the unique phylogenetic, genomic, and physiological characteristics, we propose that the DCM degrader represents a new genus and species, 'Candidatus Dichloromethanomonas elyunquensis'.
Copyright © 2016 Elsevier GmbH. All rights reserved.

Entities:  

Keywords:  Anaerobic dichloromethane degradation; Metagenome binning; Peptococcaceae; ‘Candidatus Dichloromethanomonas elyunquensis’

Mesh:

Substances:

Year:  2016        PMID: 28292625     DOI: 10.1016/j.syapm.2016.12.001

Source DB:  PubMed          Journal:  Syst Appl Microbiol        ISSN: 0723-2020            Impact factor:   4.022


  10 in total

1.  Dehalogenation of Chlorinated Ethenes to Ethene by a Novel Isolate, "Candidatus Dehalogenimonas etheniformans".

Authors:  Gao Chen; Fadime Kara Murdoch; Yongchao Xie; Robert W Murdoch; Yiru Cui; Yi Yang; Jun Yan; Trent A Key; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2022-06-08       Impact factor: 5.005

2.  Anaerobic Biodegradation of Chloroform and Dichloromethane with a Dehalobacter Enrichment Culture.

Authors:  Hao Wang; Rong Yu; Jennifer Webb; Peter Dollar; David L Freedman
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

3.  Mineralization versus fermentation: evidence for two distinct anaerobic bacterial degradation pathways for dichloromethane.

Authors:  Gao Chen; Alexander R Fisch; Caleb M Gibson; E Erin Mack; Edward S Seger; Shawn R Campagna; Frank E Löffler
Journal:  ISME J       Date:  2020-01-06       Impact factor: 10.302

4.  Novel dichloromethane-fermenting bacteria in the Peptococcaceae family.

Authors:  Sophie I Holland; Haluk Ertan; Kate Montgomery; Michael J Manefield; Matthew Lee
Journal:  ISME J       Date:  2021-01-15       Impact factor: 10.302

5.  Complete Genome Sequence of Dehalobacterium formicoaceticum Strain DMC, a Strictly Anaerobic Dichloromethane-Degrading Bacterium.

Authors:  Gao Chen; Robert W Murdoch; E Erin Mack; Edward S Seger; Frank E Löffler
Journal:  Genome Announc       Date:  2017-09-14

6.  Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21.

Authors:  Françoise Bringel; Christiaan P Postema; Sophie Mangenot; Sabrina Bibi-Triki; Pauline Chaignaud; Muhammad Farhan Ul Haque; Christelle Gruffaz; Louis Hermon; Yousra Louhichi; Bruno Maucourt; Emilie E L Muller; Thierry Nadalig; Aurélie Lajus; Zoé Rouy; Claudine Médigue; Valérie Barbe; Dick B Janssen; Stéphane Vuilleumier
Journal:  Genome Announc       Date:  2017-07-27

7.  Whole genome sequencing of a novel, dichloromethane-fermenting Peptococcaceae from an enrichment culture.

Authors:  Sophie I Holland; Richard J Edwards; Haluk Ertan; Yie Kuan Wong; Tonia L Russell; Nandan P Deshpande; Michael J Manefield; Matthew Lee
Journal:  PeerJ       Date:  2019-10-02       Impact factor: 2.984

8.  Bioelectrochemically-assisted degradation of chloroform by a co-culture of Dehalobacter and Dehalobacterium.

Authors:  David Fernández-Verdejo; Pilar Cortés; Albert Guisasola; Paqui Blánquez; Ernest Marco-Urrea
Journal:  Environ Sci Ecotechnol       Date:  2022-06-24

9.  Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation.

Authors:  Justin Wright; Veronica Kirchner; William Bernard; Nikea Ulrich; Christopher McLimans; Maria F Campa; Terry Hazen; Tamzen Macbeth; David Marabello; Jacob McDermott; Rachel Mackelprang; Kimberly Roth; Regina Lamendella
Journal:  Front Microbiol       Date:  2017-11-22       Impact factor: 5.640

10.  Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader 'Candidatus Leucobacter sulfamidivorax' strain GP.

Authors:  Ana C Reis; Boris A Kolvenbach; Mohamed Chami; Luís Gales; Conceição Egas; Philippe F-X Corvini; Olga C Nunes
Journal:  BMC Genomics       Date:  2019-11-21       Impact factor: 3.969

  10 in total

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