Literature DB >> 28290699

Toward the Classical Description of Halogen Bonds: A Quantum Based Generalized Empirical Potential for Fluorine, Chlorine, and Bromine.

Lucas A Santos1, Elaine F F da Cunha1, Teodorico C Ramalho1,2.   

Abstract

The electronic effects in supramolecular systems are a great challenge for computational chemistry, and the understanding of ligand-protein interactions driven by halogen bonds can be limited by molecular mechanics point of view. In fact, the variations of the halogen bond acceptors, such as an aromatic ring and electrons lone pairs, restrict the classical approximations even more. Our work enhances the statement that halogen bonds are led mainly by orbital interactions via σ*C-X. Nonetheless, we have pointed a straight relationship between the maximum ESP value on the σ-hole and the LUMO energy levels of the halogen bond donor. In line with this scenario, the current work introduces a new promising empirical potential based on quantum parametrizations able to describe general halogen bonded systems. The new parameters allow force fields to detect variations on the molecular electronic structure of halogenated organic compounds to improve the description of fluorine, chlorine, and bromine in halogen bonds.

Entities:  

Year:  2017        PMID: 28290699     DOI: 10.1021/acs.jpca.6b13112

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  3 in total

1.  Hybrid Molecular Dynamics for Elucidating Cooperativity Between Halogen Bond and Water Molecules During the Interaction of p53-Y220C and the PhiKan5196 Complex.

Authors:  Tian-Ge Dong; Hui Peng; Xue-Feng He; Xiaocong Wang; Jun Gao
Journal:  Front Chem       Date:  2020-05-07       Impact factor: 5.221

2.  Halogen Bonds in Ligand-Protein Systems: Molecular Orbital Theory for Drug Design.

Authors:  Enrico Margiotta; Stephanie C C van der Lubbe; Lucas de Azevedo Santos; Gabor Paragi; Stefano Moro; F Matthias Bickelhaupt; Célia Fonseca Guerra
Journal:  J Chem Inf Model       Date:  2020-02-13       Impact factor: 4.956

Review 3.  Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest.

Authors:  Lucas de Azevedo Santos; Ingrid G Prandi; Teodorico C Ramalho
Journal:  Front Chem       Date:  2019-12-13       Impact factor: 5.221

  3 in total

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