| Literature DB >> 28288174 |
Alejandro García Castaño1, Gustavo Pérez de Nanclares1, Leire Madariaga2,3, Mireia Aguirre2, Álvaro Madrid4, Sara Chocrón4, Inmaculada Nadal5, Mercedes Navarro6, Elena Lucas7, Julia Fijo8, Mar Espino9, Zilac Espitaletta10, Víctor García Nieto11, David Barajas de Frutos12, Reyner Loza13, Guillem Pintos14, Luis Castaño1,3,15, Gema Ariceta4.
Abstract
INTRODUCTION: Type III Bartter syndrome (BS) is an autosomal recessive renal tubule disorder caused by loss-of-function mutations in the CLCNKB gene, which encodes the chloride channel protein ClC-Kb. In this study, we carried out a complete clinical and genetic characterization in a cohort of 30 patients, one of the largest series described. By comparing with other published populations, and considering that 80% of our patients presented the p.Ala204Thr Spanish founder mutation presumably associated with a common phenotype, we aimed to test the hypothesis that allelic differences could explain the wide phenotypic variability observed in patients with type III BS.Entities:
Mesh:
Year: 2017 PMID: 28288174 PMCID: PMC5348002 DOI: 10.1371/journal.pone.0173581
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Description of the CLCNKB mutations observed in our cohort and their in silico pathogenicity prediction.
| Nucleotide level | Protein level | Exon | N | Polyphen2 | SIFT | SNPs&GO | MutPred | Mutation Taster |
|---|---|---|---|---|---|---|---|---|
| c.508G>A | p.Val170Met | 6 | 1 | probably damaging 0.99 | damaging 0 | disease-causing 1 | deleterious mutation 0.66 | disease-causing 0.99 |
| c.610G>A | p.Ala204Thr | 7 | 24 | probably damaging 0.97 | damaging 0 | disease-causing 1 | deleterious mutation 0.88 | disease-causing 0.36 |
| c.629C>T | p.Ala210Val | 7 | 1 | probably damaging 0.99 | damaging 0 | Neutral 1 | deleterious mutation 0.95 | disease-causing 0.99 |
| 8 | 1 | - | - | - | - | disease-causing 1 | ||
| 11 | 1 | - | - | - | - | disease-causing 1 | ||
| c.1192_1203del12 | p.Ile398_Thr401del | 12 | 1 | - | - | - | - | disease-causing 0.90 |
| c.1325A>G | p.Glu442Gly | 14 | 5 | probably damaging 1 | damaging 0 | disease-causing 3 | deleterious mutation 0.71 | disease-causing 0.99 |
| c.1756+1G>A | p.? | 16 | 1 | - | - | - | - | - |
| c.1783C>T | p.Arg595 | 17 | 1 | - | - | - | - | disease-causing 1 |
| c.(?_-1)_(*1_?)del | p.0 | 1–20 | 5 | - | - | - | - | - |
N: number of patients with the mutation;
*Score [range: benign 0- probably damaging 1];
† Score (< 0.05 damaging, > 0.05 tolerable);
‡ Confidence [range: 0–10];
Probability (> 0.5 actionable hypotheses, > 0.75 confident hypotheses);
Probability [range: 0–1]; Mutations marked in bold have not been reported to date.
Clinical characteristics of the 30 patients in our cohort (expressed as number or mean ± SD).
| All patients (n = 30) | Patients with homozygous p.Ala204Thr mutation (n = 16) | ||
|---|---|---|---|
| Prenatal onset (polyhydramnios) | 9/24 | 7/15 | NS |
| Age at diagnosis (years) | 1 [0.7–2.8] | 1.9 [0.7–2.5] | |
| Gestational age (weeks) | 39.6 ± 1.9 | 39.5 ± 2 | |
| Gender | 18 (female) / 12 (male) | 9 (female) / 7 (male) | |
| Weight (SDS) | -2.6 [-3.8; -1.6] | -3.2 [-3.9; -2.4] | |
| Height (SDS) | -1.9 [-2.3; -1.0] | -1.9 [-3; -1.4] | |
| pH | 7.49 ± 0.09 | 7.47 ± 0.09 | |
| HCO3- (mEq/L) | 31.4 ± 7.4 | 29.2 ± 5 | |
| P. Na (mEq/L) | 134.1 ± 5.3 | 135.2 ± 4.4 | |
| P. K (mEq/L) | 2.4 ± 0.6 | 2.4 ± 0.7 | |
| P. Cl (mEq/L) | 89.6 ± 11.5 | 90.4 ± 7.2 | |
| P. Creatinine (mg/dl) | 0.4 [0.3–0.5] | 0.4 [0.3–0.5] | |
| P. Mg (mg/dl) | 2.1 ± 0.5 | 2.3 ± 0.6 | |
| P. Ca (mg/dl) | 10 ± 1.2 | 9.7 ± 1.4 | |
| Renin (ng/ml/h) | 40 [20–69] | 57 [20–80] | |
| P. Aldosterone (pg/ml) | 577 [271–1348] | 1113[624–1620] | |
| FE Na% | 0.5 [0.2–1.2] | 0.9 [0.2–1.3] | |
| FE K% | 31 [21–42] | 34 [19–50] | |
| FE Cl% | 1.2 [0.5–2.2] | 1.7 [0.4–2.3] | |
| U Ca/Cr (mg/mg) | 0.3 [0.1–0.5] | 0.3 [0.2–0.4] | |
| TTKG | 12.5 ± 3.1 | 12.2 ± 3.1 | |
| U. Ca (mg/kg/d) | 6.2 ± 5.4 | 9.2 ± 5.1 |
Abbreviations: SDS, standard deviation score in comparison with an age- and sex-matched reference population; P, plasmatic; HCO3-, bicarbonate; FE, fractional excretion; TTKG, transtubular potassium gradient; U, urinary; Ca/Cr, calcium/creatinine ratio. NS, not statistically-significant.
Notes:
* Median [P25-P75]
Long-term prognosis and clinical characteristics of 15 patients with CLCNKB mutations after 17 [14–22]* years of follow-up (expressed as number or mean ± SD).
| - | At diagnosis | Last follow-up | At diagnosis | Last follow-up | At diagnosis | Last follow-up | At diagnosis | Last follow-up | At diagnosis | Last follow-up | At diagnosis | Last follow-up | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| (n = 15) | ||||||||||||||||
| SOR0003 | -0.11 | -0.01 | 1.4 | 2.6 | 11 | 3.2 | 0.43 | 0.07 | + | - | - | - | ||||
| SOR0005 | -0.97 | -0.06 | 2 | 2.2 | 9.7 | 3.7 | 0.5 | 0.31 | - | - | + | + | ||||
| SOR0008 | -3.16 | -1 | 2 | 2.7 | 5.9 | 2.8 | 0.31 | 0.13 | - | - | + | - | ||||
| SOR0009 | -3.48 | 0.1 | 1.7 | 3 | 9.2 | 1.3 | 0.33 | NA | + | - | - | - | ||||
| SOR0011 | -2.33 | -0.34 | 2 | 2.6 | 2.2 | NA | NA | NA | - | - | - | - | ||||
| SOR0023 | -3.66 | -1.3 | 3.3 | 2.7 | NA | 1 | 0.73 | 0.1 | - | - | - | - | ||||
| SOR0024 | 1.83 | 0.6 | 2.6 | 2.6 | NA | 3.1 | NA | 0.13 | - | - | - | - | ||||
| SOR0024 | -1.2 | 0.8 | 1.8 | 2.3 | 0.5 | 0.08 | NA | 0.04 | - | - | - | - | ||||
| SOR0025 | -1.96 | -0.2 | 1.4 | 3.2 | NA | 1.7 | 0.23 | 0.18 | - | - | - | - | ||||
| SOR0026 | -1.92 | -0.5 | 3.3 | 2.5 | 2.2 | 7.8 | 0.2 | 0.26 | - | - | - | - | ||||
| SOR0045 | -2.3 | -0.6 | 2.3 | 4 | NA | 4 | NA | 0.2 | - | + | - | - | ||||
| SOR0050 | -5.35 | -0.95 | 2.2 | 3.2 | NA | 1.3 | 0.03 | 0.04 | - | - | - | - | ||||
| SOR0054 | -0.27 | NA | 2.3 | 3.3 | NA | NA | 0 | 0.2 | - | + | - | - | ||||
| SOR0054 | 0.58 | NA | 2.2 | 2.8 | NA | NA | 0.53 | 0.02 | - | - | - | - | ||||
| SOR0054 | -2.06 | NA | 2.9 | 2.8 | NA | NA | 0 | 0.05 | - | + | - | - | ||||
| -1.76 ± 1.85 | -0.29 ± 0.63 | 2.2 ± 0.6 | 2.8 ± 0.5 | 5.8 ± 4.2 | 2.7 ± 2.1 | NS | 0.3 ± 0.2 | 0.1 ± 0.1 | 2/15 | 3/15 | 2/15 | 1/15 | ||||
Abbreviations: NA, not available; SDS, standard deviation score in comparison with an age- and sex-matched reference population; P, plasmatic; U, urinary; NS, not statistically-significant.
Notes:
* Median [P25-P75]