Literature DB >> 28285124

Controllable Activation of Nanoscale Dynamics in a Disordered Protein Alters Binding Kinetics.

David J E Callaway1, Tsutomu Matsui2, Thomas Weiss2, Laura R Stingaciu3, Christopher B Stanley4, William T Heller4, Zimei Bu5.   

Abstract

The phosphorylation of specific residues in a flexible disordered activation loop yields precise control of signal transduction. One paradigm is the phosphorylation of S339/S340 in the intrinsically disordered tail of the multi-domain scaffolding protein NHERF1, which affects the intracellular localization and trafficking of NHERF1 assembled signaling complexes. Using neutron spin echo spectroscopy (NSE), we show salt-concentration-dependent excitation of nanoscale motion at the tip of the C-terminal tail in the phosphomimic S339D/S340D mutant. The "tip of the whip" that is unleashed is near the S339/S340 phosphorylation site and flanks the hydrophobic Ezrin-binding motif. The kinetic association rate constant of the binding of the S339D/S340D mutant to the FERM domain of Ezrin is sensitive to buffer salt concentration, correlating with the excited nanoscale dynamics. The results suggest that electrostatics modulates the activation of nanoscale dynamics of an intrinsically disordered protein, controlling the binding kinetics of signaling partners. NSE can pinpoint the nanoscale dynamics changes in a highly specific manner.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  disordered protein; nanoscale protein motion; neutron spin echo spectroscopy; protein binding kinetics; protein dynamics

Mesh:

Substances:

Year:  2017        PMID: 28285124      PMCID: PMC5399307          DOI: 10.1016/j.jmb.2017.03.003

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  65 in total

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Authors:  J M McDonnell
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

2.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

3.  The binding mechanisms of intrinsically disordered proteins.

Authors:  Jakob Dogan; Stefano Gianni; Per Jemth
Journal:  Phys Chem Chem Phys       Date:  2013-12-06       Impact factor: 3.676

4.  Nanoscale protein domain motion and long-range allostery in signaling proteins- a view from neutron spin echo sprectroscopy.

Authors:  David J E Callaway; Zimei Bu
Journal:  Biophys Rev       Date:  2015-06

5.  Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors.

Authors: 
Journal:  Curr Opin Biotechnol       Date:  1997-02-01       Impact factor: 9.740

6.  Phosphatidylinositol 4,5-bisphosphate clusters the cell adhesion molecule CD44 and assembles a specific CD44-Ezrin heterocomplex, as revealed by small angle neutron scattering.

Authors:  Xiaodong Chen; Jahan Ali Khajeh; Jeong Ho Ju; Yogesh K Gupta; Christopher B Stanley; Changwoo Do; William T Heller; Aneel K Aggarwal; David J E Callaway; Zimei Bu
Journal:  J Biol Chem       Date:  2015-01-08       Impact factor: 5.157

7.  Ezrin induces long-range interdomain allostery in the scaffolding protein NHERF1.

Authors:  Jianquan Li; David J E Callaway; Zimei Bu
Journal:  J Mol Biol       Date:  2009-07-08       Impact factor: 5.469

Review 8.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

9.  A conformational switch in the scaffolding protein NHERF1 controls autoinhibition and complex formation.

Authors:  Shibani Bhattacharya; Zhongping Dai; Jianquan Li; Sabine Baxter; David J E Callaway; David Cowburn; Zimei Bu
Journal:  J Biol Chem       Date:  2009-12-30       Impact factor: 5.157

Review 10.  Fundamental aspects of protein-protein association kinetics.

Authors:  G Schreiber; G Haran; H-X Zhou
Journal:  Chem Rev       Date:  2009-03-11       Impact factor: 60.622

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  4 in total

1.  Dynamic structure of the full-length scaffolding protein NHERF1 influences signaling complex assembly.

Authors:  Shibani Bhattacharya; Christopher B Stanley; William T Heller; Peter A Friedman; Zimei Bu
Journal:  J Biol Chem       Date:  2019-06-06       Impact factor: 5.157

2.  Activated nanoscale actin-binding domain motion in the catenin-cadherin complex revealed by neutron spin echo spectroscopy.

Authors:  Bela Farago; Iain D Nicholl; Shen Wang; Xiaolin Cheng; David J E Callaway; Zimei Bu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-30       Impact factor: 11.205

3.  α-Catenin Structure and Nanoscale Dynamics in Solution and in Complex with F-Actin.

Authors:  Iain D Nicholl; Tsutomu Matsui; Thomas M Weiss; Christopher B Stanley; William T Heller; Anne Martel; Bela Farago; David J E Callaway; Zimei Bu
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

4.  Intrinsic disorder in the regulatory N-terminal domain of diacylglycerol acyltransferase 1 from Brassica napus.

Authors:  Rashmi Panigrahi; Tsutomu Matsui; Andrew H Song; Kristian Mark P Caldo; Howard S Young; Randall J Weselake; M Joanne Lemieux
Journal:  Sci Rep       Date:  2018-11-12       Impact factor: 4.379

  4 in total

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