| Literature DB >> 28278244 |
Oluwatoyin A Asojo1, Alan Kelleher1, Zhuyun Liu1, Jeroen Pollet1, Elissa M Hudspeth1, Wanderson C Rezende1, Mallory Jo Groen1, Christopher A Seid1, Maha Abdeladhim2, Shannon Townsend2, Waldione de Castro2, Antonio Mendes-Sousa2, Daniella Castanheira Bartholomeu3, Ricardo Toshio Fujiwara3, Maria Elena Bottazzi1,4, Peter J Hotez1,4, Bin Zhan1, Fabiano Oliveira2, Shaden Kamhawi2, Jesus G Valenzuela2.
Abstract
BACKGROUND: Immunity to the sand fly salivary protein SALO (Salivary Anticomplement of Lutzomyia longipalpis) protected hamsters against Leishmania infantum and L. braziliensis infection and, more recently, a vaccine combination of a genetically modified Leishmania with SALO conferred strong protection against L. donovani infection. Because of the importance of SALO as a potential component of a leishmaniasis vaccine, a plan to produce this recombinant protein for future scale manufacturing as well as knowledge of its structural characteristics are needed to move SALO forward for the clinical path. METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2017 PMID: 28278244 PMCID: PMC5344329 DOI: 10.1371/journal.pntd.0005374
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Statistics for data collection and model refinement.
| Data Collection | PDB entry 4lu2 |
|---|---|
| X-ray Source | Rigaku FR-E+ |
| Detector | Rigaku HTC |
| Wavelength | 0.15418 nm |
| Space group | |
| Cell dimensions | a = b = 65.28Å, c = 59.06Å α = β = γ = 90.00° |
| Resolution (Å) | 46.7–1.94 (2.0–1.94) |
| Number of total reflections | 254520 (35701) |
| Number of unique reflections | 12748 (1821) |
| | 8.8 (52.1) |
| | 23.4 (6.0) |
| Completeness (%) | 100 (100) |
| †Redundancy | 20.0 (19.6) |
| Mn(I) half-set correlation CC(1/2) | 0.998 (0.956) |
| Average Mosaicity | 0.7 |
| Resolution (Å) | 23.44–1.94 (2.23–2.10) |
| Percentage Data completeness | 99.5 (99.4) |
| | 684 reflections (5.51%) |
| Wilson B-factor (Å2) | 29.5 |
| Anisotropy | |
| No. of non-H protein atoms | 1572 |
| No. of water molecules | 18 |
| a | 0.167 (0.134) |
| b | 0.188 (0.153) |
| Correlation coefficient | 0.94 (0.96) |
| Average B-factors (Å2) | 31.3 |
| Protein (Å2) | 29.2 |
| Water and other small molecules (Å2) | 40.5 |
| r.m.s. deviations | |
| Bond lengths (Å) | 0.009 |
| Bond angles (°) | 1.074 |
| MolProbity analysis | |
| Ramachandran outliers | 0% |
| Ramachandran favored | 97.3% |
| Rotamer outliers | 1.7% |
| C-beta deviations | 0 |
| Clashscore | 0.96 |
Fig 1rSALO(P) is pure and monomeric in solution.
A) Coomassie G-250 stained NuPAGE Bis-Tris gels under reducing conditions of 2 μg purified rSALO(P) or rSALO(H). Recombinant proteins were treated with glycosidades (G) or untreated (U) before SDS-PAGE analysis. B) SEC-MALS reveals that rSALO(P) is a monomer in solution with an estimated molecular weight of 11.8 kDa. C) SEC-MALS reveals that rSALO(H) is made up of different species.
Fig 2Antibodies against rSALO(P) block anti-complement activity present in the salivary glands of the sand fly Lutzomyia longipalpis (SGH).
(A) Hemolytic assays using SGH (0.5 salivary gland pairs) in the presence of different dilutions of anti-rSALO(P) antibodies (1:10; 1:100; 1:1000 or 1:10000, in PBS). The data represents the mean ± standard deviation of three independent repetitions (ANOVA and Tukey test). Hemolysis was measured at 414nm. (B) Western blot showing rSALO(P) antibodies recognizing rSALO(P) (rSALO Pichia), native SALO from the salivary gland homogenate of Lutzomyia longipalpis (SGH), and rSALO(H) (rSALO HEK). SDS-PAGE was run under reducing conditions. Pre-immune sera was used as a control.
Fig 3Crystal structure of SALO.
A) Ribbon diagram of a SALO dimer with each monomer represented in rainbow colors from the N-terminus (blue) to the C-terminus (red). B) Ribbon diagram of a SALO monomer. C) Charge distribution on the surface of a SALO monomer in the same view as B.
Predicted MHC class II T cell epitopes for the SALO protein in humans.
| Allele | Initial Coordinate | Final Coordinate | Sequence | IC50 Affinity |
|---|---|---|---|---|
| DRB30101 | 1 | 15 | SEDCENIFHDNAYLL | 5.2 |
| DRB11302 | 1 | 15 | SEDCENIFHDNAYLL | 16.5 |
| DRB10301 | 2 | 16 | EDCENIFHDNAYLLK | 29.7 |
| DRB10101 | 54 | 68 | VAKIIRECIAQVSTQ | 32.6 |
| DRB11101 | 72 | 86 | KFSEIYDCYMKKKIC | 34.1 |
| DPA10301-DPB10402 | 3 | 17 | DCENIFHDNAYLLKL | 34.5 |
| DRB11501 | 3 | 17 | DCENIFHDNAYLLKL | 39.5 |
| DRB10101 | 2 | 16 | EDCENIFHDNAYLLK | 41.3 |
| DRB10802 | 54 | 68 | VAKIIRECIAQVSTQ | 46.2 |
| DRB40101 | 52 | 66 | EKVAKIIRECIAQVS | 46.7 |
| DRB50101 | 72 | 86 | KFSEIYDCYMKKKIC | 46.9 |
Fig 4The three predicted T cell epitopes on SALO are located on exposed helices.
The position of peptide sequences given at the bottom is shown in red on the SALO structural surface (gray).
Fig 5Comparison of SALO to PdSP15.
(A) Ribbon diagram of a SALO monomer. (B) Ribbon diagram of pdsp15 (C) C-terminus of SALO (grey) superposes well with PdSP15 (aqua marine). (D) The amino acid sequence alignment comparing SALO to PdSP15 generated with ESPript3.0 [36] reveals a conserved C-terminal odorant-binding domain. The location of the three predicted T-cell epitopes are shown as black lines. Secondary-structure elements are as follows: α-helices (α), 310-helices (η), β-strands (β) and β-turns (TT). Identical residues are shown on a red background; conserved residues are shown in red; and conserved regions are shown in blue boxes.