Literature DB >> 28277080

Shuffling cross-validation-bee algorithm as a new descriptor selection method for retention studies of pesticides in biopartitioning micellar chromatography.

Kobra Zarei1, Morteza Atabati1, Monire Ahmadi1.   

Abstract

Bee algorithm (BA) is an optimization algorithm inspired by the natural foraging behaviour of honey bees to find the optimal solution which can be proposed to feature selection. In this paper, shuffling cross-validation-BA (CV-BA) was applied to select the best descriptors that could describe the retention factor (log k) in the biopartitioning micellar chromatography (BMC) of 79 heterogeneous pesticides. Six descriptors were obtained using BA and then the selected descriptors were applied for model development using multiple linear regression (MLR). The descriptor selection was also performed using stepwise, genetic algorithm and simulated annealing methods and MLR was applied to model development and then the results were compared with those obtained from shuffling CV-BA. The results showed that shuffling CV-BA can be applied as a powerful descriptor selection method. Support vector machine (SVM) was also applied for model development using six selected descriptors by BA. The obtained statistical results using SVM were better than those obtained using MLR, as the root mean square error (RMSE) and correlation coefficient (R) for whole data set (training and test), using shuffling CV-BA-MLR, were obtained as 0.1863 and 0.9426, respectively, while these amounts for the shuffling CV-BA-SVM method were obtained as 0.0704 and 0.9922, respectively.

Entities:  

Keywords:  Pesticides; bee algorithm; quantitative structure property relationship (QSPR); shuffling cross–validation; variable selection method

Mesh:

Substances:

Year:  2017        PMID: 28277080     DOI: 10.1080/03601234.2017.1283139

Source DB:  PubMed          Journal:  J Environ Sci Health B        ISSN: 0360-1234            Impact factor:   1.990


  2 in total

1.  Comparative performance of extreme learning machine and Hammerstein-Weiner models for modelling the intestinal hyper-motility and secretory inhibitory effects of methanolic leaf extract of Combretumhypopilinum Diels (Combretaceae).

Authors:  Mubarak Hussaini Ahmad; A G Usman; S I Abba
Journal:  In Silico Pharmacol       Date:  2021-04-12

2.  Ontological model of multi-agent Smart-system for predicting drug properties based on modified algorithms of artificial immune systems.

Authors:  Galina Samigulina; Zarina Samigulina
Journal:  Theor Biol Med Model       Date:  2020-07-20       Impact factor: 2.432

  2 in total

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