Literature DB >> 28270994

Optical sorting and cultivation of denitrifying anaerobic methane oxidation archaea.

Xiaoqiong Qi1, David M Carberry2, Chen Cai3, Shihu Hu3, Zhiguo Yuan3, Halin Rubinsztein Dunlop2, Jianhua Guo4.   

Abstract

Denitrifying anaerobic methane oxidizing (DAMO) microorganisms play an important role in the global carbon and nitrogen cycles as they are able to mediate methane oxidation using nitrite/nitrate under anoxic conditions. However, the physiological properties of DAMO microorganisms remain poorly understood, partially since the organisms are difficult to isolate or cultivate in pure culture and partially because of their long cultivation time. In this study, DAMO cell sorting has been conducted by integrating optical tweezers within enclosed microfluidic chips. This integrated cell sorting method has high purity, low infection rates, and causes no discernable harm to cell viability. The purity of the sorted cells was controlled by the microfluidic chip structure design and operation, while the cell viability was verified by imaging the cultured DAMO archaea after 420 days.

Entities:  

Keywords:  (020.7010) Laser trapping; (350.4855) Optical tweezers or optical manipulation

Year:  2017        PMID: 28270994      PMCID: PMC5330591          DOI: 10.1364/BOE.8.000934

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  26 in total

1.  Microfluidic sorting in an optical lattice.

Authors:  M P MacDonald; G C Spalding; K Dholakia
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

2.  A microbial consortium couples anaerobic methane oxidation to denitrification.

Authors:  Ashna A Raghoebarsing; Arjan Pol; Katinka T van de Pas-Schoonen; Alfons J P Smolders; Katharina F Ettwig; W Irene C Rijpstra; Stefan Schouten; Jaap S Sinninghe Damsté; Huub J M Op den Camp; Mike S M Jetten; Marc Strous
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

3.  Hands-on with optical tweezers: a multitouch interface for holographic optical trapping.

Authors:  J A Grieve; A Ulcinas; S Subramanian; G M Gibson; M J Padgett; D M Carberry; M J Miles
Journal:  Opt Express       Date:  2009-03-02       Impact factor: 3.894

4.  Microfluidic-based cell sorting of Francisella tularensis infected macrophages using optical forces.

Authors:  Thomas D Perroud; Julia N Kaiser; Jay C Sy; Todd W Lane; Catherine S Branda; Anup K Singh; Kamlesh D Patel
Journal:  Anal Chem       Date:  2008-05-30       Impact factor: 6.986

5.  Enhanced cell sorting and manipulation with combined optical tweezer and microfluidic chip technologies.

Authors:  Xiaolin Wang; Shuxun Chen; Marco Kong; Zuankai Wang; Kevin D Costa; Ronald A Li; Dong Sun
Journal:  Lab Chip       Date:  2011-09-14       Impact factor: 6.799

6.  Comparison of T-matrix calculation methods for scattering by cylinders in optical tweezers.

Authors:  Xiaoqiong Qi; Timo A Nieminen; Alexander B Stilgoe; Vincent L Y Loke; Halina Rubinsztein-Dunlop
Journal:  Opt Lett       Date:  2014-08-15       Impact factor: 3.776

7.  Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.

Authors:  R I Amann; L Krumholz; D A Stahl
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

8.  Cell damage by near-IR microbeams.

Authors:  K König; H Liang; M W Berns; B J Tromberg
Journal:  Nature       Date:  1995-09-07       Impact factor: 49.962

Review 9.  Anaerobic oxidation of methane: progress with an unknown process.

Authors:  Katrin Knittel; Antje Boetius
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

10.  Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.

Authors:  Mohamed F Haroon; Shihu Hu; Ying Shi; Michael Imelfort; Jurg Keller; Philip Hugenholtz; Zhiguo Yuan; Gene W Tyson
Journal:  Nature       Date:  2013-07-28       Impact factor: 49.962

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  4 in total

Review 1.  Microfluidic single-cell analysis-Toward integration and total on-chip analysis.

Authors:  Cheuk Wang Fung; Shek Nga Chan; Angela Ruohao Wu
Journal:  Biomicrofluidics       Date:  2020-03-06       Impact factor: 2.800

2.  Archaeal imaging: leading the hunt for new discoveries.

Authors:  Alexandre W Bisson-Filho; Jenny Zheng; Ethan Garner
Journal:  Mol Biol Cell       Date:  2018-07-15       Impact factor: 4.138

3.  Long-term nitrate removal through methane-dependent denitrification microorganisms in sequencing batch reactors fed with only nitrate and methane.

Authors:  Weiwei Li; Peili Lu; Fengguang Chai; Lilan Zhang; Xinkuan Han; Daijun Zhang
Journal:  AMB Express       Date:  2018-06-30       Impact factor: 3.298

4.  High-Resolution Separation of Nanoparticles Using a Negative Magnetophoretic Microfluidic System.

Authors:  Lin Zeng; Xi Chen; Rongrong Zhang; Shi Hu; Hongpeng Zhang; Yi Zhang; Hui Yang
Journal:  Micromachines (Basel)       Date:  2022-02-26       Impact factor: 2.891

  4 in total

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