Literature DB >> 28270561

A saga of cancer epigenetics: linking epigenetics to alternative splicing.

Sathiya Pandi Narayanan1, Smriti Singh1, Sanjeev Shukla2.   

Abstract

The discovery of an increasing number of alternative splicing events in the human genome highlighted that ∼94% of genes generate alternatively spliced transcripts that may produce different protein isoforms with diverse functions. It is now well known that several diseases are a direct and indirect consequence of aberrant splicing events in humans. In addition to the conventional mode of alternative splicing regulation by 'cis' RNA-binding sites and 'trans' RNA-binding proteins, recent literature provides enormous evidence for epigenetic regulation of alternative splicing. The epigenetic modifications may regulate alternative splicing by either influencing the transcription elongation rate of RNA polymerase II or by recruiting a specific splicing regulator via different chromatin adaptors. The epigenetic alterations and aberrant alternative splicing are known to be associated with various diseases individually, but this review discusses/highlights the latest literature on the role of epigenetic alterations in the regulation of alternative splicing and thereby cancer progression. This review also points out the need for further studies to understand the interplay between epigenetic modifications and aberrant alternative splicing in cancer progression.
© 2017 The Author(s); published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  RNA polymerase; RNA-binding proteins; alternative splicing; epigenetics; methylation

Mesh:

Substances:

Year:  2017        PMID: 28270561     DOI: 10.1042/BCJ20161047

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  21 in total

1.  Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma.

Authors:  Theresa Guo; Kristina Diana A Zambo; Fernando T Zamuner; Tingting Ou; Christopher Hopkins; Dylan Z Kelley; Hildegard A Wulf; Eli Winkler; Rossin Erbe; Ludmila Danilova; Michael Considine; David Sidransky; Alexander Favorov; Liliana Florea; Elana J Fertig; Daria A Gaykalova
Journal:  Epigenetics       Date:  2020-03-22       Impact factor: 4.528

Review 2.  Biology of the mRNA Splicing Machinery and Its Dysregulation in Cancer Providing Therapeutic Opportunities.

Authors:  Maxime Blijlevens; Jing Li; Victor W van Beusechem
Journal:  Int J Mol Sci       Date:  2021-05-12       Impact factor: 5.923

Review 3.  Targeting the epigenetic regulation of antitumour immunity.

Authors:  Simon J Hogg; Paul A Beavis; Mark A Dawson; Ricky W Johnstone
Journal:  Nat Rev Drug Discov       Date:  2020-09-14       Impact factor: 84.694

4.  TIMP1 intron 3 retention is a marker of colon cancer progression controlled by hnRNPA1.

Authors:  Marion Flodrops; Gwendal Dujardin; Adeline Busson; Pascal Trouvé; Chandran Ka; Brigitte Simon; Danielle Arzur; Catherine Le Jossic-Corcos; Laurent Corcos
Journal:  Mol Biol Rep       Date:  2020-03-21       Impact factor: 2.316

Review 5.  Transcriptome Profiling in Human Diseases: New Advances and Perspectives.

Authors:  Amelia Casamassimi; Antonio Federico; Monica Rienzo; Sabrina Esposito; Alfredo Ciccodicola
Journal:  Int J Mol Sci       Date:  2017-07-29       Impact factor: 5.923

6.  Alternative splicing events implicated in carcinogenesis and prognosis of colorectal cancer.

Authors:  Jingwei Liu; Hao Li; Shixuan Shen; Liping Sun; Yuan Yuan; Chengzhong Xing
Journal:  J Cancer       Date:  2018-04-19       Impact factor: 4.207

Review 7.  Bioinformatics challenges and perspectives when studying the effect of epigenetic modifications on alternative splicing.

Authors:  Clare Pacini; Magdalena J Koziol
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

8.  Systematic analysis of alternative splicing signature unveils prognostic predictor for kidney renal clear cell carcinoma.

Authors:  Jukun Song; Yong Da Liu; Jiaming Su; Dongbo Yuan; Fa Sun; Jianguo Zhu
Journal:  J Cell Physiol       Date:  2019-05-29       Impact factor: 6.384

Review 9.  Impact of Methods on the Measurement of mRNA Turnover.

Authors:  Takeo Wada; Attila Becskei
Journal:  Int J Mol Sci       Date:  2017-12-15       Impact factor: 5.923

10.  Alternative Splicing of Differentiated Myeloid Cell Transcripts after Infection by Anaplasma phagocytophilum Impacts a Selective Group of Cellular Programs.

Authors:  J Stephen Dumler; Sara H Sinclair; Amol C Shetty
Journal:  Front Cell Infect Microbiol       Date:  2018-02-02       Impact factor: 5.293

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