Literature DB >> 28269823

Automatic Generation of Conditional Diagnostic Guidelines.

Tyler Baldwin1, Yufan Guo1, Tanveer Syeda-Mahmood1.   

Abstract

The diagnostic workup for many diseases can be extraordinarily nuanced, and as such reference material text often contains extensive information regarding when it is appropriate to have a patient undergo a given procedure. In this work we employ a three task pipeline for the extraction of statements indicating the conditions under which a procedure should be performed, given a suspected diagnosis. First, we identify each instance in the text where a procedure is being recommended. Next we examine the context around these recommendations to extract conditional statements that dictate the conditions under which the recommendation holds. Finally, corefering recommendations across the document are linked to produce a full recommendation summary. Results indicate that each underlying task can be performed with above baseline performance, and the output can be used to produce concise recommendation summaries.

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Mesh:

Year:  2017        PMID: 28269823      PMCID: PMC5333285     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  20 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Automated extraction and normalization of findings from cancer-related free-text radiology reports.

Authors:  Burke W Mamlin; Daniel T Heinze; Clement J McDonald
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  An evaluation of the UMLS in representing corpus derived clinical concepts.

Authors:  Jeff Friedlin; Marc Overhage
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

Review 4.  Evaluating the state of the art in coreference resolution for electronic medical records.

Authors:  Ozlem Uzuner; Andreea Bodnari; Shuying Shen; Tyler Forbush; John Pestian; Brett R South
Journal:  J Am Med Inform Assoc       Date:  2012-02-24       Impact factor: 4.497

5.  A flexible framework for deriving assertions from electronic medical records.

Authors:  Kirk Roberts; Sanda M Harabagiu
Journal:  J Am Med Inform Assoc       Date:  2011-07-01       Impact factor: 4.497

6.  Vaccine adverse event text mining system for extracting features from vaccine safety reports.

Authors:  Taxiarchis Botsis; Thomas Buttolph; Michael D Nguyen; Scott Winiecki; Emily Jane Woo; Robert Ball
Journal:  J Am Med Inform Assoc       Date:  2012-08-25       Impact factor: 4.497

7.  Using SemRep to label semantic relations extracted from clinical text.

Authors:  Ying Liu; Robert Bill; Marcelo Fiszman; Thomas Rindflesch; Ted Pedersen; Genevieve B Melton; Serguei V Pakhomov
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

8.  Biological network extraction from scientific literature: state of the art and challenges.

Authors:  Chen Li; Maria Liakata; Dietrich Rebholz-Schuhmann
Journal:  Brief Bioinform       Date:  2013-02-22       Impact factor: 11.622

9.  Assessing data relevance for automated generation of a clinical summary.

Authors:  Tielman T Van Vleck; Daniel M Stein; Peter D Stetson; Stephen B Johnson
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

10.  HARVEST, a longitudinal patient record summarizer.

Authors:  Jamie S Hirsch; Jessica S Tanenbaum; Sharon Lipsky Gorman; Connie Liu; Eric Schmitz; Dritan Hashorva; Artem Ervits; David Vawdrey; Marc Sturm; Noémie Elhadad
Journal:  J Am Med Inform Assoc       Date:  2014-10-28       Impact factor: 4.497

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