Literature DB >> 28269041

Multi-omic approaches for characterization of hepatocellular carcinoma.

Habtom W Ressom, Cristina Di Poto, Alessia Ferrarini, Mohammad R Nezami Ranjbar, Rency S Varghese, Mahlet G Tadesse, Yehia Mechref.   

Abstract

Multi-omic approaches offer the opportunity to characterize complex diseases such as cancer at various molecular levels. In this paper, we present transcriptomic, proteomic/glycoproteomic, glycomic, and metabolomic (TPGM) data we acquired by analysis of liver tissues from hepatocellular carcinoma (HCC) cases and patients with liver cirrhosis. We evaluated changes in the levels of transcripts, proteins, glycans, and metabolites between tumor and cirrhotic tissues by statistical methods. We demonstrated the potential of multi-omic approaches and network analysis to investigate the interactions among these biomolecules in the progression of liver cirrhosis to HCC. Also, we showed the significance of multi-omic approaches to identify pathways altered in HCC.

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Year:  2016        PMID: 28269041      PMCID: PMC5913746          DOI: 10.1109/EMBC.2016.7591467

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  7 in total

1.  Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer.

Authors:  Liat Ein-Dor; Or Zuk; Eytan Domany
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

2.  Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma.

Authors:  Chia-Hung Liu; Tzu-Chi Chen; Gar-Yang Chau; Yi-Hua Jan; Chun-Houh Chen; Chun-Nan Hsu; Kuan-Ting Lin; Yue-Li Juang; Pei-Jung Lu; Hui-Chuan Cheng; Ming-Huang Chen; Chia-Fen Chang; Yu-Shan Ting; Cheng-Yan Kao; Michael Hsiao; Chi-Ying F Huang
Journal:  Mol Cell Proteomics       Date:  2013-02-08       Impact factor: 5.911

3.  Identification of ovarian cancer driver genes by using module network integration of multi-omics data.

Authors:  Olivier Gevaert; Victor Villalobos; Branimir I Sikic; Sylvia K Plevritis
Journal:  Interface Focus       Date:  2013-08-06       Impact factor: 3.906

4.  Dynamic modularity in protein interaction networks predicts breast cancer outcome.

Authors:  Ian W Taylor; Rune Linding; David Warde-Farley; Yongmei Liu; Catia Pesquita; Daniel Faria; Shelley Bull; Tony Pawson; Quaid Morris; Jeffrey L Wrana
Journal:  Nat Biotechnol       Date:  2009-02-01       Impact factor: 54.908

5.  Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.

Authors:  Ehwang Song; Anoop Mayampurath; Chuan-Yih Yu; Haixu Tang; Yehia Mechref
Journal:  J Proteome Res       Date:  2014-11-10       Impact factor: 4.466

6.  Network-based classification of breast cancer metastasis.

Authors:  Han-Yu Chuang; Eunjung Lee; Yu-Tsueng Liu; Doheon Lee; Trey Ideker
Journal:  Mol Syst Biol       Date:  2007-10-16       Impact factor: 11.429

7.  Multi-omic network signatures of disease.

Authors:  David L Gibbs; Lisa Gralinski; Ralph S Baric; Shannon K McWeeney
Journal:  Front Genet       Date:  2014-01-07       Impact factor: 4.599

  7 in total
  2 in total

Review 1.  How to dissect the plasticity of antigen-specific immune response: a tissue perspective.

Authors:  D Amodio; V Santilli; P Zangari; N Cotugno; E C Manno; S Rocca; P Rossi; C Cancrini; A Finocchi; A Chassiakos; C Petrovas; P Palma
Journal:  Clin Exp Immunol       Date:  2019-10-31       Impact factor: 4.330

Review 2.  Current Applications of Metabolomics in Cirrhosis.

Authors:  Vinshi Khan; Nagireddy Putluri; Arun Sreekumar; Ayse L Mindikoglu
Journal:  Metabolites       Date:  2018-10-22
  2 in total

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