Literature DB >> 28267930

Comparison of Calcium Dynamics and Specific Features for G Protein-Coupled Receptor-Targeting Drugs Using Live Cell Imaging and Automated Analysis.

Rishikesh Kumar Gupta1, Sarpras Swain1, Dinesh Kankanamge2, Pantula Devi Priyanka1, Ranjana Singh1, Kishalay Mitra1, Ajith Karunarathne2, Lopamudra Giri1.   

Abstract

G protein-coupled receptors (GPCRs) are targets for designing a large fraction of the drugs in the pharmaceutical industry. For GPCR-targeting drug screening using cell-based assays, measurement of cytosolic calcium has been widely used to obtain dose-response profiles. However, it remains challenging to obtain drug-specific features due to cell-to-cell heterogeneity in drug-cell responses obtained from live cell imaging. Here, we present a framework combining live cell imaging of a cell population and a feature extraction method for classification of responses of drugs targeting GPCRs CXCR4 and α2AR. We measured the calcium dynamics using confocal microscopy and compared the responses for SDF-1α and norepinephrine. The results clearly show that the clustering patterns of responses for the two GPCRs are significantly different. Additionally, we show that different drugs targeting the same GPCR induce different calcium response signatures. We also implemented principal component analysis and k means for feature extraction and used nondominated (ND) sorting for ranking a group of drugs at various doses. The presented approach can be used to model a cell population as a mixture of subpopulations. It also offers specific advantages, such as higher spatial resolution, classification of responses, and ranking of drugs, potentially providing a platform for high-content drug screening.

Entities:  

Keywords:  G protein–coupled receptor (GPCR); cell-to-cell heterogeneity; confocal microscopy; high-content screening; live cell calcium imaging

Mesh:

Substances:

Year:  2017        PMID: 28267930     DOI: 10.1177/2472555217693378

Source DB:  PubMed          Journal:  SLAS Discov        ISSN: 2472-5552            Impact factor:   3.341


  3 in total

1.  Statins Perturb Gβγ Signaling and Cell Behavior in a Gγ Subtype Dependent Manner.

Authors:  Mithila Tennakoon; Dinesh Kankanamge; Kanishka Senarath; Zehra Fasih; Ajith Karunarathne
Journal:  Mol Pharmacol       Date:  2019-02-14       Impact factor: 4.436

2.  Abnormal Complement Activation and Inflammation in the Pathogenesis of Retinopathy of Prematurity.

Authors:  Sonika Rathi; Subhadra Jalali; Satish Patnaik; Shahna Shahulhameed; Ganeswara R Musada; Divya Balakrishnan; Padmaja K Rani; Ramesh Kekunnaya; Preeti Patil Chhablani; Sarpras Swain; Lopamudra Giri; Subhabrata Chakrabarti; Inderjeet Kaur
Journal:  Front Immunol       Date:  2017-12-22       Impact factor: 7.561

3.  CAMKK2-CAMK4 signaling regulates transferrin trafficking, turnover, and iron homeostasis.

Authors:  Mohammad Golam Sabbir
Journal:  Cell Commun Signal       Date:  2020-05-27       Impact factor: 5.712

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.