Literature DB >> 28267654

Designing repeat proteins: a modular approach to protein design.

Fabio Parmeggiani1, Po-Ssu Huang2.   

Abstract

Repeat proteins present unique opportunities for engineering because of their modular nature that potentially allows LEGO® like construction of macromolecules. Nature takes advantage of these properties and uses this type of scaffold for recognition, structure, and even signaling purposes. In recent years, new protein modeling tools facilitated the design of novel repeat proteins, creating possibilities beyond naturally occurring scaffolds alone. We highlight here the different design strategies and summarize the various structural families and novel proteins achieved.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28267654     DOI: 10.1016/j.sbi.2017.02.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.

Authors:  Bram Mylemans; Hiroki Noguchi; Els Deridder; Eveline Lescrinier; Jeremy R H Tame; Arnout R D Voet
Journal:  Protein Sci       Date:  2020-10-16       Impact factor: 6.725

Review 2.  Hierarchical design of artificial proteins and complexes toward synthetic structural biology.

Authors:  Ryoichi Arai
Journal:  Biophys Rev       Date:  2017-12-14

Review 3.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

Review 4.  Designed for life: biocompatible de novo designed proteins and components.

Authors:  Katie J Grayson; J L Ross Anderson
Journal:  J R Soc Interface       Date:  2018-08       Impact factor: 4.118

5.  Ligand-induced conformational switch in an artificial bidomain protein scaffold.

Authors:  Corentin Léger; Thibault Di Meo; Magali Aumont-Nicaise; Christophe Velours; Dominique Durand; Ines Li de la Sierra-Gallay; Herman van Tilbeurgh; Niko Hildebrandt; Michel Desmadril; Agathe Urvoas; Marie Valerio-Lepiniec; Philippe Minard
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

Review 6.  Harnessing Conformational Plasticity to Generate Designer Enzymes.

Authors:  Rory M Crean; Jasmine M Gardner; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2020-06-17       Impact factor: 15.419

7.  Designed folding pathway of modular coiled-coil-based proteins.

Authors:  Jana Aupič; Žiga Strmšek; Fabio Lapenta; David Pahovnik; Tomaž Pisanski; Igor Drobnak; Ajasja Ljubetič; Roman Jerala
Journal:  Nat Commun       Date:  2021-02-11       Impact factor: 14.919

8.  Protein design under competing conditions for the availability of amino acids.

Authors:  Francesca Nerattini; Luca Tubiana; Chiara Cardelli; Valentino Bianco; Christoph Dellago; Ivan Coluzza
Journal:  Sci Rep       Date:  2020-02-14       Impact factor: 4.379

9.  Modular repeat protein sculpting using rigid helical junctions.

Authors:  T J Brunette; Matthew J Bick; Jesse M Hansen; Cameron M Chow; Justin M Kollman; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-03       Impact factor: 11.205

10.  Elfin UI: A Graphical Interface for Protein Design With Modular Building Blocks.

Authors:  Chun-Ting Yeh; Leon Obendorf; Fabio Parmeggiani
Journal:  Front Bioeng Biotechnol       Date:  2020-10-23
  10 in total

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