Literature DB >> 28262894

In silico environmental chemical science: properties and processes from statistical and computational modelling.

Paul G Tratnyek1, Eric J Bylaska2, Eric J Weber3.   

Abstract

Quantitative structure-activity relationships (QSARs) have long been used in the environmental sciences. More recently, molecular modeling and chemoinformatic methods have become widespread. These methods have the potential to expand and accelerate advances in environmental chemistry because they complement observational and experimental data with "in silico" results and analysis. The opportunities and challenges that arise at the intersection between statistical and theoretical in silico methods are most apparent in the context of properties that determine the environmental fate and effects of chemical contaminants (degradation rate constants, partition coefficients, toxicities, etc.). The main example of this is the calibration of QSARs using descriptor variable data calculated from molecular modeling, which can make QSARs more useful for predicting property data that are unavailable, but also can make them more powerful tools for diagnosis of fate determining pathways and mechanisms. Emerging opportunities for "in silico environmental chemical science" are to move beyond the calculation of specific chemical properties using statistical models and toward more fully in silico models, prediction of transformation pathways and products, incorporation of environmental factors into model predictions, integration of databases and predictive models into more comprehensive and efficient tools for exposure assessment, and extending the applicability of all the above from chemicals to biologicals and materials.

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Year:  2017        PMID: 28262894     DOI: 10.1039/c7em00053g

Source DB:  PubMed          Journal:  Environ Sci Process Impacts        ISSN: 2050-7887            Impact factor:   4.238


  5 in total

1.  In Silico Screening of Synthetic and Natural Compounds to Inhibit the Binding Capacity of Heavy Metal Compounds against EGFR Protein of Lung Cancer.

Authors:  Zainab Ayaz; Bibi Zainab; Umer Rashid; Noura M Darwish; Mansour K Gatasheh; Arshad Mehmood Abbasi
Journal:  Biomed Res Int       Date:  2022-05-14       Impact factor: 3.246

2.  Quantitative structure activity relationships (QSARs) and machine learning models for abiotic reduction of organic compounds by an aqueous Fe(II) complex.

Authors:  Yidan Gao; Shifa Zhong; Tifany L Torralba-Sanchez; Paul G Tratnyek; Eric J Weber; Yiling Chen; Huichun Zhang
Journal:  Water Res       Date:  2021-01-15       Impact factor: 11.236

Review 3.  Brain physiome: A concept bridging in vitro 3D brain models and in silico models for predicting drug toxicity in the brain.

Authors:  Yoojin Seo; Seokyoung Bang; Jeongtae Son; Dongsup Kim; Yong Jeong; Pilnam Kim; Jihun Yang; Joon-Ho Eom; Nakwon Choi; Hong Nam Kim
Journal:  Bioact Mater       Date:  2021-11-12

4.  QSAR and Classification Study on Prediction of Acute Oral Toxicity of N-Nitroso Compounds.

Authors:  Tengjiao Fan; Guohui Sun; Lijiao Zhao; Xin Cui; Rugang Zhong
Journal:  Int J Mol Sci       Date:  2018-10-03       Impact factor: 5.923

Review 5.  In silico prediction of toxicity and its applications for chemicals at work.

Authors:  Kyung-Taek Rim
Journal:  Toxicol Environ Health Sci       Date:  2020-05-14
  5 in total

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