| Literature DB >> 28261167 |
Anja Hoffmann1, Martina Richter1, Susanne von Grafenstein2, Elisabeth Walther1, Zhongli Xu1, Lilia Schumann1, Ulrike Grienke3, Christina E Mair3, Christian Kramer2, Judith M Rollinger3, Klaus R Liedl2, Michaela Schmidtke1, Johannes Kirchmair4.
Abstract
Viral neuraminidases are an established drug target to combat influenza. Severe complications observed in influenza patients are primarily caused by secondary infections with e.g., Streptococcus pneumoniae. These bacteria engage in a lethal synergism with influenza A viruses (IAVs) and also express neuraminidases. Therefore, inhibitors with dual activity on viral and bacterial neuraminidases are expected to be advantageous for the treatment of influenza infections. Here we report on the discovery and characterization of diazenylaryl sulfonic acids as dual inhibitors of viral and Streptococcus pneumoniae neuraminidase. The initial hit came from a virtual screening campaign for inhibitors of viral neuraminidases. For the most active compound, 7-[2-[4-[2-[4-[2-(2-hydroxy-3,6-disulfo-1-naphthalenyl)diazenyl]-2-methylphenyl]diazenyl]-2-methylphenyl]diazenyl]-1,3-naphthalenedisulfonic acid (NSC65847; 1), the Ki-values measured in a fluorescence-based assay were lower than 1.5 μM for both viral and pneumococcal neuraminidases. The compound also inhibited N1 virus variants containing neuraminidase inhibitor resistance-conferring substitutions. Via enzyme kinetics and nonlinear regression modeling, 1 was suggested to impair the viral neuraminidases and pneumococcal neuraminidase with a mixed-type inhibition mode. Given its antiviral and antipneumococcal activity, 1 was identified as a starting point for the development of novel, dual-acting anti-infectives.Entities:
Keywords: Streptococcus pneumoniae; coinfection; diazenylaryl sulfonic acid; influenza virus; neuraminidase; small molecule inhibitor
Year: 2017 PMID: 28261167 PMCID: PMC5309245 DOI: 10.3389/fmicb.2017.00205
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Inhibition of IAV and .
| 1 | 65847 | 1.40 ± 0.39 | 0.44 ± 0.10 | 1.42 ± 0.44 | 0.32 ± 0.05 | 10.00 ± 0.00 | 7.26 ± 3.75 |
| 2 | 73416 | Not active | 20.73 ± 2.59 | 83.02 ± 5.67 | 1.85 ± 0.10 | Not active | 10.00 ± 0.00 |
| 3 | 65545 | Not active | Not active | Not active | 11.62 ± 0.15 | Not active | Not active |
| 4 | 65557 | 84.27 ± 7.00 | Not active | 71.10 ± 22.01 | 4.79 ± 1.31 | Not active | Not active |
| 5 | 45601 | 16.00 ± 5.05 | 6.70 ± 0.43 | 17.79 ± 3.25 | 0.97 ± 0.30 | 10.00 ± 0.00 | 2.44 ± 1.25 |
| 6 | 65826 | Not active | 36.40 ± 4.20 | 83.45 ± 3.67 | 1.18 ± 0.55 | 24.40 ± 12.47 | Not active |
| 7 | 65551 | 65.40 ± 24.22 | 4.25 ± 1.25 | 87.17 ± 8.03 | 5.60 ± 3.01 | Not active | Not active |
| 8 | 65553 | Not active | 6.51 ± 0.72 | Not active | 3.90 ± 0.51 | Not active | Not active |
| 9 | 58050 | Not active | 22.66 ± 2.91 | Not active | 31.96 ± 10.92 | Not active | Not active |
| 10 | 75953 | Not active | Not active | Not active | 10.18 ± 1.35 | Not active | Not active |
| 11 | 45538 | Not active | 33.07 ± 4.60 | 77.26 ± 10.57 | 23.19 ± 13.12 | Not active | Not active |
| 12 | 45540 | Not active | Not active | Not active | Not active | Not active | Not active |
| 13 | 45541 | Not active | Not active | Not active | Not active | Not active | Not active |
| 14 | 45576 | Not active | 28.92 ± 6.90 | 83.02 ± 6.25 | 5.74 ± 1.41 | Not active | Not active |
| 15 | 75957 | Not active | 28.73 ± 3.30 | Not active | 46.79 ± 5.27 | Not active | Not active |
| 16 | 45582 | 92.27 ± 10.01 | 44.27 ± 2.38 | Not active | 7.68 ± 0.98 | 31.60 ± 0.00 | 24.40 ± 12.47 |
| 17 | 45549 | Not active | Not active | Not active | Not active | Not active | Not active |
| Osel | 0.003 ± 0.002 | 0.002 ± 0.001 | 0.0003 ± 0.0001 | 1.12 ± 0.32 | 0.0007 ± 0.0004 | 2.08 ± 1.25 | |
Mean and standard deviations of at least three independent experiments are shown.
For comparison data published by Richter et al. (.
Not active at concentrations that either did not provoke hemagglutination or prevented virus-induced hemagglutination of human erythrocytes at certain concentrations (Supplementary Table .
Figure 1Overview of the diazenylaryl sulfonic acids investigated in this work.
.
| 8919_LC | 18.01 ± 2.39 | 0.11 ± 0.02 | Mixed | |
| 20566_LC | 17.92 ± 2.12 | 0.12 ± 0.01 | Mixed | |
| 20566_CC | 20.20 ± 4.74 | 0.16 ± 0.03 | Mixed | |
| 9400_LC | 46.16 ± 1.71 | 0.19 ± 0.02 | Mixed | |
| 9400_CC | 46.39 ± 3.93 | 0.16 ± 0.01 | Mixed | |
| Influenza virus A/WSN/33 | without preincubation | 40.00 ± 3.86 | 0.60 ± 0.06 | Mixed |
| 20 min preincubation | 44.17 ± 4.63 | 0.60 ± 0.17 | Mixed | |
With the exception of Influenza virus A/WSN/33 without preincubation (n = 2), means and standard deviations of at least 3 assays are shown.
Influence of amino acid substitutions in the influenza virus A/WSN/33 NA on the activity of test compounds.
| Oseltamivir | 0.0018 ± 0.0005 | 0.45 ± 0.03*** | 248 | 0.15 ± 0.01*** | 83 | 0.012 ± 0.003* | 7 | 0.0023 ± 0.0002 | 1 | 0.0061 ± 0.0015** | 3 | 0.0029 ± 0.0003 | 2 |
| DANA | 2.44 ± 1.08 | 2.51 ± 1.38 | 1 | 8.12 ± 2.07* | 3 | 8.36 ± 3.13* | 3 | 2.33 ± 1.32 | 1 | 12.84 ± 0.75*** | 4 | 2.21 ± 0.62 | 1 |
| 0.44 ± 0.10 | 1.14 ± 0.13** | 3 | 0.62 ± 0.13 | 1 | 0.33 ± 0.02 | 1 | 0.74 ± 0.17 | 2 | 0.51 ± 0.02 | 1 | 0.77 ± 0.29 | 2 | |
| 20.73 ± 2.59 | 31.91 ± 1.13** | 2 | 16.97 ± 1.47 | 1 | 4.79 ± 1.13** | 0.2 | 35.38 ± 4.08 | 2 | 20.90 ± 4.21 | 1 | 26.31 ± 7.87 | 1 | |
| 6.70 ± 0.43 | 18.04 ± 1.90** | 3 | 20.13 ± 0.66*** | 3 | 6.06 ± 1.79 | 1 | 14.16 ± 0.26*** | 2 | 11.24 ± 1.57* | 2 | 16.42 ± 2.12* | 2 | |
Mean and standard deviation of 50% inhibitory concentration (IC.
Fold changes (FC) indicate the ratio of the mean IC.
Cytotoxicity, antiviral, and antibacterial activity of studied compounds.
| 1 | >100 | 20.36 ± 2.51 | 7.17 ± 0.96 | 18.50 ± 9.59 | 28.75 ± 13.13 | 49% |
| 2 | >100 | 9.09 ± 1.94 | 11.83 ± 3.19 | 6.19 ± 4.62 | 4.59 ± 2.45 | 47% |
| 3 | >100 | 14.42 ± 8.16 | 52.20 ± 17.91 | 13.63 ± 3.18 | 20.14 ± 2.24 | Not active |
| 4 | >100 | 12.10 ± 4.83 | 13.96 ± 2.68 | 13.19 ± 3.11 | 11.97 ± 6.81 | 46% |
| 5 | >100 | Not active | Not active | Not active | Not active | 42.23 ± 2.57 |
| 6 | >100 | 10.58 ± 0.71 | 24.22 ± 9.78 | 20.82 ± 1.99 | 6.14 ± 0.61 | 46% |
| 7 | >100 | 3.28 ± 2.19 | 78.63 ± 16.18 | 4.22 ± 0.98 | 3.32 ± 0.72 | 46% |
| 8 | >100 | Not active | Not active | Not active | Not active | Not active |
| 9 | >100 | Not active | Not active | Not active | Not active | Not active |
| 10 | >100 | Not active | Not active | Not active | Not active | Not active |
| 11 | >100 | Not active | Not active | Not active | Not active | Not active |
| 12 | >100 | Not active | Not active | Not active | Not active | Not active |
| 13 | >100 | Not active | Not active | Not active | Not active | Not active |
| 14 | >100 | Not active | Not active | Not active | Not active | Not active |
| 15 | >100 | Not active | Not active | Not active | Not active | Not active |
| 16 | >100 | Not active | Not active | Not active | 11.97 ± 6.81 | 46% |
| 17 | >100 | Not active | Not active | Not active | Not active | Not active |
| Oseltamivir | 0.034 ± 0.022 | 0.009 ± 0.003 | 0.003 ± 0.001 | Not studied | Not studied | |
At least three independent assays were used to calculate mean and standard deviation in the cytopathic effect inhibition assays in MDCK cells. The maximum tested concentration in the cytopathic effect inhibition and antibacterial assays was 100 and 50 μM, respectively.
Inhibition of pneumococci activity at the maximum tested concentration of 50 μM.
Not studied as control because confirmed as inactive (Walther et al., .
Figure 2Recombinant pneumococcal NA (NanA) does not reduce the inhibitory effect of 1 on virus yield. Influenza virus A/Jena/8178/09 (Jena/8178)-infected A549 cells (MOI of 0.1 TCID50/cells) were treated with 10 μM of 1 in the absence or presence of NanA. Virus titers in pfu/mL were determined with plaque assay 48 h after infection. Virus control titer was set to 100% and inhibition of the control titer by NAI in % was calculated. Experiments were performed twice with two parallels. Results of one representative assay are shown exemplarily. Exact numbers of plaque-forming units are reported in Supplementary Table 2.
Figure 3Modified plaque reduction assay with (A) 1 μM of oseltamivir and (B) 100 μM of 1. “#” indicates a slight (plaques are half as large compared to the virus control) and “##” a strong (plaques have about 10% of the size of the virus control) plaque size reduction. Bars represent the mean values and SD of at least three experiments, each with two parallels per concentration. Images documenting the observed plaque size reduction are provided in Supplementary Figure 3.
Figure 4Potential binding mode of 5 (green carbon atoms) to N1 neuraminidase [Protein Data Bank (PDB) 2hu0]. Oseltamivir is depicted in ball-and-stick mode with orange carbon atoms. In the proposed binding mode, the sulfonic acid and phenolic moieties of 5 are oriented toward the positively charged R118, R224, R292, and R371, hence forming ionic interactions and a tight network of hydrogen bonds. The compound fits well to the molecular shape of the ligand interaction site. Hydrophobic surface contacts are formed, e.g., between the ligand's terminal phenyl moiety and I427 and K432.